Proteogenomic data and resources for pan-cancer analysis

Y Li, Y Dou, FDV Leprevost, Y Geffen, AP Calinawan… - Cancer cell, 2023 - cell.com
Summary The National Cancer Institute's Clinical Proteomic Tumor Analysis Consortium
(CPTAC) investigates tumors from a proteogenomic perspective, creating rich multi-omics …

Co-occurring genomic alterations in non-small-cell lung cancer biology and therapy

F Skoulidis, JV Heymach - Nature Reviews Cancer, 2019 - nature.com
The impressive clinical activity of small-molecule receptor tyrosine kinase inhibitors for
oncogene-addicted subgroups of non-small-cell lung cancer (for example, those driven by …

Androgen receptor activity in T cells limits checkpoint blockade efficacy

X Guan, F Polesso, C Wang, A Sehrawat, RM Hawkins… - Nature, 2022 - nature.com
Immune checkpoint blockade has revolutionized the field of oncology, inducing durable anti-
tumour immunity in solid tumours. In patients with advanced prostate cancer …

Trastuzumab deruxtecan in metastatic breast cancer with variable HER2 expression: the phase 2 DAISY trial

F Mosele, E Deluche, A Lusque, L Le Bescond… - Nature medicine, 2023 - nature.com
The mechanisms of action of and resistance to trastuzumab deruxtecan (T-DXd), an anti-
HER2–drug conjugate for breast cancer treatment, remain unclear. The phase 2 DAISY trial …

[HTML][HTML] Conserved pan-cancer microenvironment subtypes predict response to immunotherapy

A Bagaev, N Kotlov, K Nomie, V Svekolkin, A Gafurov… - Cancer cell, 2021 - cell.com
The clinical use of molecular targeted therapy is rapidly evolving but has primarily focused
on genomic alterations. Transcriptomic analysis offers an opportunity to dissect the …

[HTML][HTML] High tumor mutation burden fails to predict immune checkpoint blockade response across all cancer types

DJ McGrail, PG Pilié, NU Rashid, L Voorwerk… - Annals of …, 2021 - Elsevier
Background High tumor mutation burden (TMB-H) has been proposed as a predictive
biomarker for response to immune checkpoint blockade (ICB), largely due to the potential for …

Genomic and transcriptomic analysis of checkpoint blockade response in advanced non-small cell lung cancer

A Ravi, MD Hellmann, MB Arniella, M Holton… - Nature …, 2023 - nature.com
Abstract Anti-PD-1/PD-L1 agents have transformed the treatment landscape of advanced
non-small cell lung cancer (NSCLC). To expand our understanding of the molecular features …

Persistent mutation burden drives sustained anti-tumor immune responses

N Niknafs, A Balan, C Cherry, K Hummelink… - Nature medicine, 2023 - nature.com
Tumor mutation burden is an imperfect proxy of tumor foreignness and has therefore failed
to consistently demonstrate clinical utility in predicting responses in the context of …

Therapy-induced APOBEC3A drives evolution of persistent cancer cells

H Isozaki, R Sakhtemani, A Abbasi, N Nikpour… - Nature, 2023 - nature.com
Acquired drug resistance to anticancer targeted therapies remains an unsolved clinical
problem. Although many drivers of acquired drug resistance have been identified,,–, the …

Microbiome analyses of blood and tissues suggest cancer diagnostic approach

GD Poore, E Kopylova, Q Zhu, C Carpenter… - Nature, 2020 - pmc.ncbi.nlm.nih.gov
Systematic characterization of the cancer microbiome provides a unique opportunity to
develop cancer diagnostics that exploit non-human, microbial-derived molecules in a major …