Genomic selection in aquaculture: application, limitations and opportunities with special reference to marine shrimp and pearl oysters
Within aquaculture industries, selection based on genomic information (genomic selection)
has the profound potential to change genetic improvement programs and production …
has the profound potential to change genetic improvement programs and production …
A meta-assembly of selection signatures in cattle
Since domestication, significant genetic improvement has been achieved for many traits of
commercial importance in cattle, including adaptation, appearance and production. In …
commercial importance in cattle, including adaptation, appearance and production. In …
Development and validation of a high density SNP genotyping array for Atlantic salmon (Salmo salar)
Background Dense single nucleotide polymorphism (SNP) genotyping arrays provide
extensive information on polymorphic variation across the genome of species of interest …
extensive information on polymorphic variation across the genome of species of interest …
Genomic prediction using imputed whole-genome sequence data in Holstein Friesian cattle
R Van Binsbergen, MPL Calus, MCAM Bink… - Genetics Selection …, 2015 - Springer
Background In contrast to currently used single nucleotide polymorphism (SNP) panels, the
use of whole-genome sequence data is expected to enable the direct estimation of the …
use of whole-genome sequence data is expected to enable the direct estimation of the …
Evaluation of the accuracy of imputed sequence variant genotypes and their utility for causal variant detection in cattle
Background The availability of dense genotypes and whole-genome sequence variants from
various sources offers the opportunity to compile large datasets consisting of tens of …
various sources offers the opportunity to compile large datasets consisting of tens of …
Development and evaluation of the first high-throughput SNP array for common carp (Cyprinus carpio)
Background A large number of single nucleotide polymorphisms (SNPs) have been
identified in common carp (Cyprinus carpio) but, as yet, no high-throughput genotyping …
identified in common carp (Cyprinus carpio) but, as yet, no high-throughput genotyping …
Composite selection signals can localize the trait specific genomic regions in multi-breed populations of cattle and sheep
Background Discerning the traits evolving under neutral conditions from those traits evolving
rapidly because of various selection pressures is a great challenge. We propose a new …
rapidly because of various selection pressures is a great challenge. We propose a new …
Accuracy of genotype imputation in Nelore cattle
R Carvalheiro, SA Boison, HHR Neves… - Genetics Selection …, 2014 - Springer
Background Genotype imputation from low-density (LD) to high-density single nucleotide
polymorphism (SNP) chips is an important step before applying genomic selection, since …
polymorphism (SNP) chips is an important step before applying genomic selection, since …
[HTML][HTML] Invited review: Good practices in genome-wide association studies to identify candidate sequence variants in dairy cattle
Genotype data from dairy cattle selection programs have greatly facilitated GWAS to identify
variants related to economic traits. Results can enhance the accuracy of genomic prediction …
variants related to economic traits. Results can enhance the accuracy of genomic prediction …
Single nucleotide polymorphisms generated by genotyping by sequencing to characterize genome-wide diversity, linkage disequilibrium, and selective sweeps in …
P Nimmakayala, A Levi, L Abburi, VL Abburi… - BMC genomics, 2014 - Springer
Background A large single nucleotide polymorphism (SNP) dataset was used to analyze
genome-wide diversity in a diverse collection of watermelon cultivars representing globally …
genome-wide diversity in a diverse collection of watermelon cultivars representing globally …