Methods and applications of in silico aptamer design and modeling
AA Buglak, AV Samokhvalov, AV Zherdev… - International journal of …, 2020 - mdpi.com
Aptamers are nucleic acid analogues of antibodies with high affinity to different targets, such
as cells, viruses, proteins, inorganic materials, and coenzymes. Empirical approaches allow …
as cells, viruses, proteins, inorganic materials, and coenzymes. Empirical approaches allow …
G-quadruplex-based aptamers against protein targets in therapy and diagnostics
C Platella, C Riccardi, D Montesarchio… - … et Biophysica Acta (BBA …, 2017 - Elsevier
Nucleic acid aptamers are single-stranded DNA or RNA molecules identified to recognize
with high affinity specific targets including proteins, small molecules, ions, whole cells and …
with high affinity specific targets including proteins, small molecules, ions, whole cells and …
Post-SELEX optimization of aptamers
S Gao, X Zheng, B Jiao, L Wang - Analytical and bioanalytical chemistry, 2016 - Springer
Aptamers are functional single-stranded DNA or RNA oligonucleotides, selected in vitro by
SELEX (Systematic Evolution of Ligands by Exponential Enrichment), which can fold into …
SELEX (Systematic Evolution of Ligands by Exponential Enrichment), which can fold into …
G-quadruplex-based aptamers targeting human thrombin: Discovery, chemical modifications and antithrombotic effects
C Riccardi, E Napolitano, C Platella… - Pharmacology & …, 2021 - Elsevier
First studies on thrombin-inhibiting DNA aptamers were reported in 1992, and since then a
large number of anticoagulant aptamers has been discovered. TBA–also named HD1, a 15 …
large number of anticoagulant aptamers has been discovered. TBA–also named HD1, a 15 …
Impact of G-quadruplexes on the regulation of genome integrity, DNA damage and repair
AV Pavlova, EA Kubareva, MV Monakhova, MI Zvereva… - Biomolecules, 2021 - mdpi.com
DNA G-quadruplexes (G4s) are known to be an integral part of the complex regulatory
systems in both normal and pathological cells. At the same time, the ability of G4s to impede …
systems in both normal and pathological cells. At the same time, the ability of G4s to impede …
Applications of aptamers for chemistry analysis, medicine and food security
R Huang, Z Xi, N He - Science China Chemistry, 2015 - Springer
Since aptamer and its in vitro selection process called SELEX were independently
described by Ellington and Gold in 1990, extensive research has been undertaken and …
described by Ellington and Gold in 1990, extensive research has been undertaken and …
SELEX modifications and bioanalytical techniques for aptamer–target binding characterization
The quest to improve the detection of biomolecules and cells in health and life sciences has
led to the discovery and characterization of various affinity bioprobes. Libraries of synthetic …
led to the discovery and characterization of various affinity bioprobes. Libraries of synthetic …
i-Clamp phenoxazine for the fine tuning of DNA i-motif stability
VB Tsvetkov, TS Zatsepin, ES Belyaev… - Nucleic Acids …, 2018 - academic.oup.com
Non-canonical DNA structures are widely used for regulation of gene expression, in DNA
nanotechnology and for the development of new DNA-based sensors. I-motifs (iMs) are two …
nanotechnology and for the development of new DNA-based sensors. I-motifs (iMs) are two …
Responses of DNA mismatch repair proteins to a stable G-quadruplex embedded into a DNA duplex structure
AV Pavlova, MV Monakhova, AM Ogloblina… - International Journal of …, 2020 - mdpi.com
DNA mismatch repair (MMR) plays a crucial role in the maintenance of genomic stability.
The main MMR protein, MutS, was recently shown to recognize the G-quadruplex (G4) DNA …
The main MMR protein, MutS, was recently shown to recognize the G-quadruplex (G4) DNA …
Trends in the design and development of specific aptamers against peptides and proteins
M Tabarzad, M Jafari - The Protein Journal, 2016 - Springer
Aptamers are single stranded oligonucleotides, comparable to monoclonal antibodies
(mAbs) in selectivity and affinity and have significant strategic properties in design …
(mAbs) in selectivity and affinity and have significant strategic properties in design …