(Differential) co-expression analysis of gene expression: a survey of best practices

HA Chowdhury, DK Bhattacharyya… - IEEE/ACM transactions …, 2019 - ieeexplore.ieee.org
Analysis of gene expression data is widely used in transcriptomic studies to understand
functions of molecules inside a cell and interactions among molecules. Differential co …

Identifying disease-gene associations using a convolutional neural network-based model by embedding a biological knowledge graph with entity descriptions

W Choi, H Lee - Plos one, 2021 - journals.plos.org
Understanding the role of genes in human disease is of high importance. However,
identifying genes associated with human diseases requires laborious experiments that …

[图书][B] Gene expression data analysis: a statistical and machine learning perspective

P Barah, DK Bhattacharyya, JK Kalita - 2021 - taylorfrancis.com
Development of high-throughput technologies in molecular biology during the last two
decades has contributed to the production of tremendous amounts of data. Microarray and …

[HTML][HTML] A Multi-Molecular Fusion to Detect Transcriptomic Signature in Tissue-Specific Cancer

S Saha, S Mallik, S Bandyopadhyay - Eurasian Journal of Medicine …, 2022 - accscience.com
Objectives: Analysis of multi-molecular interactions and detection of combinatorial
transcriptomic signatures are emerging as important research topics in disease analytics …

A rectified factor network based biclustering method for detecting cancer-related coding genes and miRNAs, and their interactions

L Su, G Liu, J Wang, D Xu - Methods, 2019 - Elsevier
Detecting cancer-related genes and their interactions is a crucial task in cancer research.
For this purpose, we proposed an efficient method, to detect coding genes, microRNAs …

DeMoS: dense module based gene signature detection through quasi-clique: an application to cervical cancer prognosis

S Saha, S Seth, S Ghosh, G Qin, T Bhadra… - … Modeling Analysis in …, 2024 - Springer
Nowadays, cervical cancer is a leading cause of death among women. Determining the
gene signature is one of the major issues in bioinformatics. Though many of the …

CanMod: A computational model to identify co-regulatory modules in cancer

D Do, S Bozdag - Proceedings of the 11th ACM International …, 2020 - dl.acm.org
Transcription factors (TFs) and microRNAs (miRNAs) are two important classes of gene
regulators that govern many critical biological processes. Dysregulation of TF-gene and …

Inference and Analysis of Multilayered Mirna-Mediated Networks in Cancer

D Do - 2018 - search.proquest.com
MicroRNAs (miRNAs) are small noncoding transcripts that can regulate gene expression,
thereby controlling diverse biological processes. Aberrant disruptions of miRNA expression …