Open-source machine learning in computational chemistry

A Hagg, KN Kirschner - Journal of Chemical Information and …, 2023 - ACS Publications
The field of computational chemistry has seen a significant increase in the integration of
machine learning concepts and algorithms. In this Perspective, we surveyed 179 open …

CASA, the Common Astronomy Software Applications for radio astronomy

B Bean, S Bhatnagar, S Castro, JD Meyer… - Publications of the …, 2022 - iopscience.iop.org
Abstract CASA, the Common Astronomy Software Applications, is the primary data
processing software for the Atacama Large Millimeter/submillimeter Array (ALMA) and the …

Python battery mathematical modelling (PyBaMM)

V Sulzer, SG Marquis, R Timms, M Robinson… - Journal of Open …, 2021 - ora.ox.ac.uk
As the UK battery modelling community grows, there is a clear need for software that uses
modern software engineering techniques to facilitate cross-institutional collaboration and …

Using Jupyter for reproducible scientific workflows

M Beg, J Taka, T Kluyver, A Konovalov… - … in Science & …, 2021 - ieeexplore.ieee.org
Literate computing has emerged as an important tool for computational studies and open
science, with growing folklore of best practices. In this work, we report two case studies …

Topic modeling in software engineering research

CC Silva, M Galster, F Gilson - Empirical Software Engineering, 2021 - Springer
Topic modeling using models such as Latent Dirichlet Allocation (LDA) is a text mining
technique to extract human-readable semantic “topics”(ie, word clusters) from a corpus of …

Estimating the genome-wide contribution of selection to temporal allele frequency change

V Buffalo, G Coop - … of the National Academy of Sciences, 2020 - National Acad Sciences
Rapid phenotypic adaptation is often observed in natural populations and selection
experiments. However, detecting the genome-wide impact of this selection is difficult since …

HealtheDataLab–a cloud computing solution for data science and advanced analytics in healthcare with application to predicting multi-center pediatric readmissions

L Ehwerhemuepha, G Gasperino, N Bischoff… - BMC medical informatics …, 2020 - Springer
Background There is a shortage of medical informatics and data science platforms using
cloud computing on electronic medical record (EMR) data, and with computing capacity for …

Truncated marginal neural ratio estimation

BK Miller, A Cole, P Forré, G Louppe… - Advances in Neural …, 2021 - proceedings.neurips.cc
Parametric stochastic simulators are ubiquitous in science, often featuring high-dimensional
input parameters and/or an intractable likelihood. Performing Bayesian parameter inference …

EOS: a software for flavor physics phenomenology

D van Dyk, F Beaujean, T Blake, C Bobeth… - The European Physical …, 2022 - Springer
EOS is an open-source software for a variety of computational tasks in flavor physics. Its use
cases include theory predictions within and beyond the Standard Model of particle physics …

Fast and accurate annotation of acoustic signals with deep neural networks

E Steinfath, A Palacios-Muñoz, JR Rottschäfer… - Elife, 2021 - elifesciences.org
Acoustic signals serve communication within and across species throughout the animal
kingdom. Studying the genetics, evolution, and neurobiology of acoustic communication …