Methods of privacy-preserving genomic sequencing data alignments

D Lu, Y Zhang, L Zhang, H Wang… - Briefings in …, 2021 - academic.oup.com
Genomic data alignment, a fundamental operation in sequencing, can be utilized to map
reads into a reference sequence, query on a genomic database and perform genetic tests …

Digital dna lifecycle security and privacy: an overview

MM Alsaffar, M Hasan, GP McStay… - Briefings in …, 2022 - academic.oup.com
DNA sequencing technologies have advanced significantly in the last few years leading to
advancements in biomedical research which has improved personalised medicine and the …

Dyps: Dynamic, private and secure gwas

T Pascoal, J Decouchant, A Boutet… - Proceedings on Privacy …, 2021 - orbilu.uni.lu
Genome-Wide Association Studies (GWAS) identify the genomic variations that are
statistically associated with a particular phenotype (eg, a disease). The confidence in GWAS …

DNA-SeAl: sensitivity levels to optimize the performance of privacy-preserving DNA alignment

M Fernandes, J Decouchant, M Völp… - IEEE Journal of …, 2019 - ieeexplore.ieee.org
The advent of next-generation sequencing (NGS) machines made DNA sequencing
cheaper, but also put pressure on the genomic life-cycle, which includes aligning millions of …

Maskal: Privacy preserving masked reads alignment using intel sgx

C Lambert, M Fernandes, J Decouchant… - 2018 IEEE 37th …, 2018 - ieeexplore.ieee.org
The recent introduction of new DNA sequencing techniques caused the amount of
processed and stored biological data to skyrocket. In order to process these vast amounts of …

Security, privacy, and trust management in DNA computing

M Fernandes, J Decouchant, FM Couto - Advances in Computers, 2023 - Elsevier
DNA computing is an emerging field that aims at enabling more efficient data storage and
processing. One principle of DNA computing is to encode some information (eg, image …

Hunting the pertinency of bloom filter in computer networking and beyond: A survey

R Patgiri, S Nayak, SK Borgohain - Journal of Computer …, 2019 - Wiley Online Library
Bloom filter is a probabilistic data structure to filter a membership of a set. Bloom filter returns
“true” or “false” with an error tolerance depending on the presence of the element in the set …

Ethical, legal, and social issues (ELSI) of responsible data sharing involving children in genomics: a systematic literature review of reasons

V Rahimzadeh, BM Knoppers… - AJOB Empirical Bioethics, 2020 - Taylor & Francis
Background Progress in precision medicine relies on the access to, use of, and exchange of
genomic and associated clinical data, including from children. The ethical, legal, and social …

Morton filter-based security mechanism for healthcare system in cloud computing

S Bhatia, J Malhotra - Healthcare, 2021 - mdpi.com
Electronic health records contain the patient's sensitive information. If these data are
acquired by a malicious user, it will not only cause the pilferage of the patient's personal …

Parallel algorithm for sensitive sequence recognition from long-read genome data with high error rate.

Z Cheng, SUN Hui - Journal on Communication/Tongxin …, 2023 - search.ebscohost.com
To solve the problem that existing algorithms were difficult to effectively identify sensitive
sequences in genomic data for long-read with high error rate, a recognition algorithm using …