Metrics for benchmarking and uncertainty quantification: Quality, applicability, and best practices for machine learning in chemistry

G Vishwakarma, A Sonpal, J Hachmann - Trends in Chemistry, 2021 - cell.com
This review aims to draw attention to two issues of concern when we set out to make
machine learning work in the chemical and materials domain, that is, statistical loss function …

Free and open source software for computational chemistry education

S Lehtola, AJ Karttunen - Wiley Interdisciplinary Reviews …, 2022 - Wiley Online Library
After decades of waiting, computational chemistry for the masses is finally here. Our brief
review on free and open source software (FOSS) packages points out the existence of …

Google colab and virtual simulations: practical e-learning tools to support the teaching of thermodynamics and to introduce coding to students

W Vallejo, C Díaz-Uribe, C Fajardo - ACS omega, 2022 - ACS Publications
Various studies have reported the versatility and great scope of programming tools in all
areas of knowledge. Coding is generally of paramount importance to chemistry students …

[HTML][HTML] Machine learning, artificial intelligence, and chemistry: How smart algorithms are reshaping simulation and the laboratory

D Kuntz, AK Wilson - Pure and Applied Chemistry, 2022 - degruyter.com
Abstract Machine learning and artificial intelligence are increasingly gaining in prominence
through image analysis, language processing, and automation, to name a few applications …

[HTML][HTML] Publishing computational research-a review of infrastructures for reproducible and transparent scholarly communication

M Konkol, D Nüst, L Goulier - Research integrity and peer review, 2020 - Springer
Background The trend toward open science increases the pressure on authors to provide
access to the source code and data they used to compute the results reported in their …

eChem: A notebook exploration of quantum chemistry

T Fransson, MG Delcey, IE Brumboiu, M Hodecker, X Li… - 2023 - ACS Publications
The eChem project features an e-book published as a web page (10.30746/978-91-988114-
0-7), collecting a repository of Jupyter notebooks developed for the dual purpose of …

[HTML][HTML] cclib 2.0: An updated architecture for interoperable computational chemistry

E Berquist, A Dumi, S Upadhyay… - The Journal of …, 2024 - pubs.aip.org
Interoperability in computational chemistry is elusive, impeded by the independent
development of software packages and idiosyncratic nature of their output files. The cclib …

Building toward the future in chemical and materials simulation with accessible and intelligently designed web applications

EJ Bylaska, D Song, ES Ilton, S O'Leary… - Annual Reports in …, 2021 - Elsevier
Over the last few decades, significant progress has been made in the development and use
of electronic structure and other molecular simulation methods. As these methods become …

Massively parallel fragment-based quantum chemistry for large molecular systems: the serestipy software

P Eschenbach, N Niemeyer… - Canadian Journal of …, 2023 - cdnsciencepub.com
We present the Serestipy software as an add-on to the quantum-chemistry program Serenity.
Serestipy is a representational-state transfer-oriented application programming interface …

Markup language for chemical process control and simulation

E Barrows, K Martin, T Smith - Computers & Chemical Engineering, 2022 - Elsevier
Exothermic reactions can yield different products, depending upon the available heat
energy, a consequence of the reaction rate. To control the yield of desired products, control …