1000 bull genomes project to map simple and complex genetic traits in cattle: applications and outcomes

BJ Hayes, HD Daetwyler - Annual review of animal biosciences, 2019 - annualreviews.org
The 1000 Bull Genomes Project is a collection of whole-genome sequences from 2,703
individuals capturing a significant proportion of the world's cattle diversity. So far, 84 million …

[HTML][HTML] A 100-Year Review: Reproductive technologies in dairy science

SG Moore, JF Hasler - Journal of dairy science, 2017 - Elsevier
Reproductive technology revolutionized dairy production during the past century. Artificial
insemination was first successfully applied to cattle in the early 1900s. The next major …

De novo assembly of the cattle reference genome with single-molecule sequencing

BD Rosen, DM Bickhart, RD Schnabel, S Koren… - …, 2020 - academic.oup.com
Background Major advances in selection progress for cattle have been made following the
introduction of genomic tools over the past 10–12 years. These tools depend upon the Bos …

OrthoDB v10: sampling the diversity of animal, plant, fungal, protist, bacterial and viral genomes for evolutionary and functional annotations of orthologs

EV Kriventseva, D Kuznetsov, F Tegenfeldt… - Nucleic acids …, 2019 - academic.oup.com
Abstract OrthoDB (https://www. orthodb. org) provides evolutionary and functional
annotations of orthologs. This update features a major scaling up of the resource coverage …

The Ensembl gene annotation system

BL Aken, S Ayling, D Barrell, L Clarke, V Curwen… - Database, 2016 - academic.oup.com
The Ensembl gene annotation system has been used to annotate over 70 different
vertebrate species across a wide range of genome projects. Furthermore, it generates the …

Building a livestock genetic and genomic information knowledgebase through integrative developments of Animal QTLdb and CorrDB

ZL Hu, CA Park, JM Reecy - Nucleic acids research, 2019 - academic.oup.com
Successful development of biological databases requires accommodation of the burgeoning
amounts of data from high-throughput genomics pipelines. As the volume of curated data in …

OrthoDB v9. 1: cataloging evolutionary and functional annotations for animal, fungal, plant, archaeal, bacterial and viral orthologs

EM Zdobnov, F Tegenfeldt, D Kuznetsov… - Nucleic acids …, 2017 - academic.oup.com
OrthoDB is a comprehensive catalog of orthologs, genes inherited by extant species from a
single gene in their last common ancestor. In 2016 OrthoDB reached its 9th release, growing …

Dynamics of genome size evolution in birds and mammals

A Kapusta, A Suh, C Feschotte - Proceedings of the …, 2017 - National Acad Sciences
Genome size in mammals and birds shows remarkably little interspecific variation compared
with other taxa. However, genome sequencing has revealed that many mammal and bird …

Single-molecule sequencing and chromatin conformation capture enable de novo reference assembly of the domestic goat genome

DM Bickhart, BD Rosen, S Koren, BL Sayre… - Nature …, 2017 - nature.com
The decrease in sequencing cost and increased sophistication of assembly algorithms for
short-read platforms has resulted in a sharp increase in the number of species with genome …

The yak genome and adaptation to life at high altitude

Q Qiu, G Zhang, T Ma, W Qian, J Wang, Z Ye, C Cao… - Nature …, 2012 - nature.com
Domestic yaks (Bos grunniens) provide meat and other necessities for Tibetans living at
high altitude on the Qinghai-Tibetan Plateau and in adjacent regions. Comparison between …