Toward a foundation model of causal cell and tissue biology with a Perturbation Cell and Tissue Atlas

JE Rood, A Hupalowska, A Regev - Cell, 2024 - cell.com
Comprehensively charting the biologically causal circuits that govern the phenotypic space
of human cells has often been viewed as an insurmountable challenge. However, in the last …

Massively parallel in vivo Perturb-seq reveals cell-type-specific transcriptional networks in cortical development

X Zheng, B Wu, Y Liu, SK Simmons, K Kim, GS Clarke… - Cell, 2024 - cell.com
Leveraging AAVs' versatile tropism and labeling capacity, we expanded the scale of in vivo
CRISPR screening with single-cell transcriptomic phenotyping across embryonic to adult …

Transcriptome-wide characterization of genetic perturbations

A Nadig, JM Replogle, AN Pogson, SA McCarroll… - …, 2024 - pmc.ncbi.nlm.nih.gov
Single cell CRISPR screens such as Perturb-seq enable transcriptomic profiling of genetic
perturbations at scale. However, the data produced by these screens are often noisy due to …

A platform for multimodal in vivo pooled genetic screens reveals regulators of liver function

RA Saunders, WE Allen, X Pan, J Sandhu, J Lu, TK Lau… - bioRxiv, 2024 - biorxiv.org
Organ function requires coordinated activities of thousands of genes in distinct, spatially
organized cell types. Understanding the basis of emergent tissue function requires …

Beyond Traditional Bioremediation: The Potential of Engineered SynComs in Tackling Complex Environmental Pollutants

L Han - Genomics and Applied Biology, 2024 - bioscipublisher.com
Environmental pollution remains a critical global challenge, necessitating innovative and
effective remediation strategies. Traditional bioremediation methods, while eco-friendly and …