Modulation of the root microbiome by plant molecules: the basis for targeted disease suppression and plant growth promotion

A Pascale, S Proietti, IS Pantelides… - Frontiers in plant …, 2020 - frontiersin.org
Plants host a mesmerizing diversity of microbes inside and around their roots, known as the
microbiome. The microbiome is composed mostly of fungi, bacteria, oomycetes, and …

Advances and challenges in metatranscriptomic analysis

M Shakya, CC Lo, PSG Chain - Frontiers in genetics, 2019 - frontiersin.org
Sequencing-based analyses of microbiomes have traditionally focused on addressing the
question of community membership and profiling taxonomic abundance through amplicon …

The invisible life inside plants: Deciphering the riddles of endophytic bacterial diversity

J Papik, M Folkmanova, M Polivkova-Majorova… - Biotechnology …, 2020 - Elsevier
Endophytic bacteria often promote plant growth and protect their host plant against
pathogens, herbivores, and abiotic stresses including drought, increased salinity or …

[HTML][HTML] Altered microbiome composition in individuals with fibromyalgia

A Minerbi, E Gonzalez, NJB Brereton, A Anjarkouchian… - Pain, 2019 - journals.lww.com
Fibromyalgia (FM) is a prevalent syndrome, characterised by chronic widespread pain,
fatigue, and impaired sleep, that is challenging to diagnose and difficult to treat. The …

Microbial interactions within beneficial consortia promote soil health

D Wu, W Wang, Y Yao, H Li, Q Wang, B Niu - Science of the Total …, 2023 - Elsevier
By ecologically interacting with various biotic and abiotic agents acting in soil ecosystems,
highly diverse soil microorganisms establish complex and stable assemblages and survive …

Metatranscriptomics for the human microbiome and microbial community functional profiling

Y Zhang, KN Thompson, T Branck, Y Yan… - Annual Review of …, 2021 - annualreviews.org
Shotgun metatranscriptomics (MTX) is an increasingly practical way to survey microbial
community gene function and regulation at scale. This review begins by summarizing the …

Genome-resolved metatranscriptomics reveals conserved root colonization determinants in a synthetic microbiota

N Vannier, F Mesny, F Getzke, G Chesneau… - Nature …, 2023 - nature.com
The identification of processes activated by specific microbes during microbiota colonization
of plant roots has been hampered by technical constraints in metatranscriptomics. These …

Rhizoremediation of petroleum hydrocarbons: a model system for plant microbiome manipulation

S Correa‐García, P Pande, A Séguin… - Microbial …, 2018 - Wiley Online Library
Phytoremediation is a green and sustainable alternative to physico‐chemical methods for
contaminated soil remediation. One of the flavours of phytoremediation is rhizoremediation …

Milk kefir alters fecal microbiota impacting gut and brain health in mice

MF Albuquerque Pereira, LG Morais de Ávila… - Applied Microbiology …, 2023 - Springer
Kefir is a fermented beverage made of a symbiotic microbial community that stands out for
health benefits. Although its microbial profile is still little explored, its effects on modulation of …

The nexus between plant and plant microbiome: revelation of the networking strategies

OO Babalola, AE Fadiji, BJ Enagbonma… - Frontiers in …, 2020 - frontiersin.org
The diversity of plant-associated microbes is enormous and complex. These microbiomes
are structured and form complex interconnected microbial networks that are important in …