Biochar for agronomy, animal farming, anaerobic digestion, composting, water treatment, soil remediation, construction, energy storage, and carbon sequestration: a …

AI Osman, S Fawzy, M Farghali, M El-Azazy… - Environmental …, 2022 - Springer
In the context of climate change and the circular economy, biochar has recently found many
applications in various sectors as a versatile and recycled material. Here, we review …

Human-and machine-centred designs of molecules and materials for sustainability and decarbonization

J Peng, D Schwalbe-Koda, K Akkiraju, T Xie… - Nature Reviews …, 2022 - nature.com
Breakthroughs in molecular and materials discovery require meaningful outliers to be
identified in existing trends. As knowledge accumulates, the inherent bias of human intuition …

Biological sequence design with gflownets

M Jain, E Bengio, A Hernandez-Garcia… - International …, 2022 - proceedings.mlr.press
Abstract Design of de novo biological sequences with desired properties, like protein and
DNA sequences, often involves an active loop with several rounds of molecule ideation and …

SELFIES and the future of molecular string representations

M Krenn, Q Ai, S Barthel, N Carson, A Frei, NC Frey… - Patterns, 2022 - cell.com
Artificial intelligence (AI) and machine learning (ML) are expanding in popularity for broad
applications to challenging tasks in chemistry and materials science. Examples include the …

Machine learning guided synthesis of flash graphene

JL Beckham, KM Wyss, Y Xie, EA McHugh… - Advanced …, 2022 - Wiley Online Library
Advances in nanoscience have enabled the synthesis of nanomaterials, such as graphene,
from low‐value or waste materials through flash Joule heating. Though this capability is …

Bayesian optimization of nanoporous materials

A Deshwal, CM Simon, JR Doppa - Molecular Systems Design & …, 2021 - pubs.rsc.org
Nanoporous materials (NPMs) could be used to store, capture, and sense many different
gases. Given an adsorption task, we often wish to search a library of NPMs for the one with …

Bayesian optimization package: PHYSBO

Y Motoyama, R Tamura, K Yoshimi, K Terayama… - Computer Physics …, 2022 - Elsevier
PHYSBO (optimization tools for PHYSics based on Bayesian Optimization) is a Python
library for fast and scalable Bayesian optimization. It has been developed mainly for …

Transfer learning for Bayesian optimization: A survey

T Bai, Y Li, Y Shen, X Zhang, W Zhang… - arXiv preprint arXiv …, 2023 - arxiv.org
A wide spectrum of design and decision problems, including parameter tuning, A/B testing
and drug design, intrinsically are instances of black-box optimization. Bayesian optimization …

Importance weighted expectation-maximization for protein sequence design

Z Song, L Li - International Conference on Machine Learning, 2023 - proceedings.mlr.press
Designing protein sequences with desired biological function is crucial in biology and
chemistry. Recent machine learning methods use a surrogate sequence-function model to …

Bootstrapped training of score-conditioned generator for offline design of biological sequences

M Kim, F Berto, S Ahn, J Park - Advances in Neural …, 2024 - proceedings.neurips.cc
We study the problem of optimizing biological sequences, eg, proteins, DNA, and RNA, to
maximize a black-box score function that is only evaluated in an offline dataset. We propose …