[HTML][HTML] Past, present, and future perspectives of environmental DNA (eDNA) metabarcoding: A systematic review in methods, monitoring, and applications of global …

KM Ruppert, RJ Kline, MS Rahman - Global Ecology and Conservation, 2019 - Elsevier
Environmental DNA (eDNA) metabarcoding is a novel method of assessing biodiversity
wherein samples are taken from the environment via water, sediment or air from which DNA …

[HTML][HTML] Environmental DNA metabarcoding for benthic monitoring: A review of sediment sampling and DNA extraction methods

J Pawlowski, K Bruce, K Panksep, FI Aguirre… - Science of the Total …, 2022 - Elsevier
Environmental DNA (eDNA) metabarcoding (parallel sequencing of DNA/RNA for
identification of whole communities within a targeted group) is revolutionizing the field of …

Environmental RNA: a revolution in ecological resolution?

MC Yates, AM Derry, ME Cristescu - Trends in Ecology & Evolution, 2021 - cell.com
Current advancements in environmental RNA (eRNA) exploit its relatively fast turnover rate
relative to environmental DNA (eDNA) to assess 'metabolically active'or temporally/spatially …

Ecosystems monitoring powered by environmental genomics: a review of current strategies with an implementation roadmap

T Cordier, L Alonso‐Sáez… - Molecular …, 2021 - Wiley Online Library
A decade after environmental scientists integrated high‐throughput sequencing
technologies in their toolbox, the genomics‐based monitoring of anthropogenic impacts on …

[HTML][HTML] DNA metabarcoding of littoral hard-bottom communities: high diversity and database gaps revealed by two molecular markers

OS Wangensteen, C Palacín, M Guardiola, X Turon - PeerJ, 2018 - peerj.com
Biodiversity assessment of marine hard-bottom communities is hindered by the high
diversity and size-ranges of the organisms present. We developed a DNA metabarcoding …

Embracing environmental genomics and machine learning for routine biomonitoring

T Cordier, A Lanzén, L Apothéloz-Perret-Gentil… - Trends in …, 2019 - cell.com
Genomics is fast becoming a routine tool in medical diagnostics and cutting-edge
biotechnologies. Yet, its use for environmental biomonitoring is still considered a futuristic …

Adapting metabarcoding-based benthic biomonitoring into routine marine ecological status assessment networks

E Aylagas, Á Borja, I Muxika, N Rodríguez-Ezpeleta - Ecological Indicators, 2018 - Elsevier
The use of genomic approaches to assist with biodiversity estimations is an alternative to
traditional biomonitoring, which is very time-consuming and costly. In response to the high …

Bioinformatic pipelines combining denoising and clustering tools allow for more comprehensive prokaryotic and eukaryotic metabarcoding

MI Brandt, B Trouche, L Quintric… - Molecular Ecology …, 2021 - Wiley Online Library
Environmental DNA metabarcoding is a powerful tool for studying biodiversity. However,
bioinformatic approaches need to adjust to the diversity of taxonomic compartments targeted …

[HTML][HTML] Fish environmental RNA enables precise ecological surveys with high positive predictivity

K Miyata, Y Inoue, Y Amano, T Nishioka, M Yamane… - Ecological …, 2021 - Elsevier
Metabarcoding analysis using environmental DNA (eDNA) is increasingly being used for
monitoring biota. However, knowledge regarding abundance of fish environmental RNA …

Harnessing decay rates for coastal marine biosecurity applications: A review of environmental DNA and RNA fate

M Scriver, A Zaiko, X Pochon… - Environmental …, 2023 - Wiley Online Library
Marine nonindigenous species (NIS) are spreading at an alarming rate internationally
through anthropogenic activities such as shipping and aquaculture, affecting local …