MitoFinder: Efficient automated large‐scale extraction of mitogenomic data in target enrichment phylogenomics

R Allio, A Schomaker‐Bastos… - Molecular ecology …, 2020 - Wiley Online Library
Thanks to the development of high‐throughput sequencing technologies, target enrichment
sequencing of nuclear ultraconserved DNA elements (UCEs) now allows routine inference …

A plea for standardized nuclear markers in metazoan DNA taxonomy

J Eberle, D Ahrens, C Mayer, O Niehuis… - Trends in Ecology & …, 2020 - cell.com
The ease of sequencing DNA barcodes promoted a species identification system universally
applicable across animal phyla. However, relying on a single mitochondrial DNA fragment …

Understanding UCEs: a comprehensive primer on using ultraconserved elements for arthropod phylogenomics

YM Zhang, JL Williams, A Lucky - Insect Systematics and …, 2019 - academic.oup.com
Targeted enrichment of ultraconserved elements (UCEs) has emerged as a promising tool
for inferring evolutionary history in many taxa, with utility ranging from phylogenetic and …

Standardized nuclear markers improve and homogenize species delimitation in Metazoa

L Dietz, J Eberle, C Mayer, S Kukowka… - Methods in Ecology …, 2023 - Wiley Online Library
Species are the fundamental units of life and evolution. Their recognition is essential for
science and society. Molecular methods have been increasingly used for the identification of …

The coevolution of fungus-ant agriculture

TR Schultz, J Sosa-Calvo, MP Kweskin, MW Lloyd… - Science, 2024 - science.org
Fungus-farming ants cultivate multiple lineages of fungi for food, but, because fungal cultivar
relationships are largely unresolved, the history of fungus-ant coevolution remains poorly …

Convergent evolution of complex structures for ant–bacterial defensive symbiosis in fungus-farming ants

H Li, J Sosa-Calvo, HA Horn… - Proceedings of the …, 2018 - National Acad Sciences
Evolutionary adaptations for maintaining beneficial microbes are hallmarks of mutualistic
evolution. Fungus-farming “attine” ant species have complex cuticular modifications and …

Phylogeny, evolution, and classification of the ant genus Lasius, the tribe Lasiini and the subfamily Formicinae (Hymenoptera: Formicidae)

BE Boudinot, ML Borowiec… - Systematic …, 2022 - Wiley Online Library
Within the Formicidae, the higher classification of nearly all subfamilies has been recently
revised given the findings of molecular phylogenetics. Here, we integrate morphology and …

The molecular phylogenetics of Trachymyrmex Forel ants and their fungal cultivars provide insights into the origin and coevolutionary history of 'higher‐attine' ant …

SE Solomon, C Rabeling, J Sosa‐Calvo… - Systematic …, 2019 - Wiley Online Library
The fungus‐growing ants and their fungal cultivars constitute a classic example of a
mutualism that has led to complex coevolutionary dynamics spanning c. 55–65 Ma. Of the …

A novel probe set for the phylogenomics and evolution of RTA spiders

J Zhang, Z Li, J Lai, Z Zhang, F Zhang - Cladistics, 2023 - Wiley Online Library
Spiders are important models for evolutionary studies of web building, sexual selection and
adaptive radiation. The recent development of probes for UCE (ultra‐conserved element) …

Optimized DNA extraction and library preparation for minute arthropods: application to target enrichment in chalcid wasps used for biocontrol

A Cruaud, S Nidelet, P Arnal, A Weber… - Molecular Ecology …, 2019 - Wiley Online Library
Target enrichment is increasingly used for genotyping of plant and animal species or to
better understand the evolutionary history of important lineages through the inference of …