HLA class I binding of HBZ determines outcome in HTLV-1 infection

A MacNamara, A Rowan, S Hilburn, U Kadolsky… - PLoS …, 2010 - journals.plos.org
CD8+ T cells can exert both protective and harmful effects on the virus-infected host.
However, there is no systematic method to identify the attributes of a protective CD8+ T cell …

In silico predicted mycobacterial epitope elicits in vitro T-cell responses

MK Khan, S Zaman, S Chakraborty, R Chakravorty… - Molecular …, 2014 - Elsevier
Epitope-based vaccines permit the selection of only a specific subset of epitopes to induce
the necessary immune response, thus providing a rational alternative to conventional design …

HIV‐1 evolution in relation to molecular epidemiology and antiretroviral resistance

H Skar, C Hedskog, J Albert - Annals of the New York Academy …, 2011 - Wiley Online Library
HIV/AIDS has become one of the most important infectious diseases with a cumulative
number of almost 60 million infections worldwide. The prevalence and epidemiological …

Physicochemical determinants of antibody-protein interactions

M Karadag, M Arslan, NE Kaleli, S Kalyoncu - Advances in Protein …, 2020 - Elsevier
Antibodies are specialized proteins generated by immune system for high specificity and
affinity binding to target antigens. Because of their essential roles in immune system …

Predicted MHC peptide binding promiscuity explains MHC class I 'hotspots' of antigen presentation defined by mass spectrometry eluted ligand data

EC Jappe, J Kringelum, T Trolle, M Nielsen - Immunology, 2018 - Wiley Online Library
Peptides that bind to and are presented by MHC class I and class II molecules collectively
make up the immunopeptidome. In the context of vaccine development, an understanding of …

Sequence-and interactome-based prediction of viral protein hotspots targeting host proteins: a case study for HIV Nef

M Sarmady, W Dampier, A Tozeren - PLoS One, 2011 - journals.plos.org
Virus proteins alter protein pathways of the host toward the synthesis of viral particles by
breaking and making edges via binding to host proteins. In this study, we developed a …

Whole-Genome Immunoinformatic Analysis of F. tularensis: Predicted CTL Epitopes Clustered in Hotspots Are Prone to Elicit a T-Cell Response

A Zvi, S Rotem, E Bar-Haim, O Cohen, A Shafferman - PloS one, 2011 - journals.plos.org
The cellular arm of the immune response plays a central role in the defense against
intracellular pathogens, such as F. tularensis. To date, whole genome immunoinformatic …

HLA supertypes contribute in HIV type 1 cytotoxic T lymphocyte epitope clustering in Nef and Gag proteins

S Chakraborty, T Rahman, R Chakravorty… - AIDS research and …, 2013 - liebertpub.com
Induction of HIV-1-specific cytotoxic T lymphocyte (CTL) responses largely depends upon
the presentation of CTL epitopes to the CD8+ T cells aided by a large number of different …

Analysis of HIV-1 envelope evolution suggests antibody-mediated selection of common epitopes among Chinese former plasma donors from a narrow-source …

SM Andrews, Y Zhang, T Dong, SL Rowland-Jones… - Scientific Reports, 2018 - nature.com
The HIV-1 envelope mutates rapidly to evade recognition and killing, and is a major target of
humoral immune responses and vaccine development. Identification of common epitopes for …

[HTML][HTML] Key role of human leukocyte antigen in modulating human immunodeficiency virus progression: an overview of the possible applications

A Grifoni, C Montesano, V Colizzi… - World Journal of …, 2015 - ncbi.nlm.nih.gov
Host and viral factors deeply influence the human immunodeficiency virus (HIV) disease
progression. Among them human leukocyte antigen (HLA) locus plays a key role at different …