[HTML][HTML] Bypassing anti-PD-(L) 1 therapy: Mechanisms and management strategies

K Mortezaee, J Majidpoor, S Najafi, D Tasa - Biomedicine & …, 2023 - Elsevier
Resistance to immune checkpoint inhibitors (ICIs) is a major issue of the current era in
cancer immunotherapy. Immune evasion is a multi-factorial event, which occurs generally at …

Transcriptomic subtyping of gastrointestinal malignancies

TR de Back, SR van Hooff, DW Sommeijer… - Trends in Cancer, 2024 - cell.com
Gastrointestinal (GI) cancers are highly heterogeneous at multiple levels. Tumor
heterogeneity can be captured by molecular profiling, such as genetic, epigenetic …

DNA mismatch repair protects the genome from oxygen-induced replicative mutagenesis

R Lózsa, E Németh, JZ Gervai, BG Márkus… - Nucleic Acids …, 2023 - academic.oup.com
DNA mismatch repair (MMR) corrects mismatched DNA bases arising from multiple sources
including polymerase errors and base damage. By detecting spontaneous mutagenesis …

Prediction of Clinical Precision Chemotherapy by Patient‐Derived 3D Bioprinting Models of Colorectal Cancer and Its Liver Metastases

H Sun, L Sun, X Ke, L Liu, C Li, B Jin, P Wang… - Advanced …, 2024 - Wiley Online Library
Methods accurately predicting the responses of colorectal cancer (CRC) and colorectal
cancer liver metastasis (CRLM) to personalized chemotherapy remain limited due to tumor …

Prognostic genome and transcriptome signatures in colorectal cancers

L Nunes, F Li, M Wu, T Luo, K Hammarström, E Torell… - Nature, 2024 - nature.com
Colorectal cancer is caused by a sequence of somatic genomic alterations affecting driver
genes in core cancer pathways. Here, to understand the functional and prognostic impact of …

Plasma proteomic and polygenic profiling improve risk stratification and personalized screening for colorectal cancer

J Sun, Y Liu, J Zhao, B Lu, S Zhou, W Lu, J Wei… - Nature …, 2024 - nature.com
This study aims to identify colorectal cancer (CRC)-related proteomic profiles and develop a
prediction model for CRC onset by integrating proteomic profiles with genetic and non …

Comprehensive characterization of tumor microenvironment in colorectal cancer via molecular analysis

X Wu, H Yan, M Qiu, X Qu, J Wang, S Xu, Y Zheng… - Elife, 2023 - elifesciences.org
Colorectal cancer (CRC) remains a challenging and deadly disease with high tumor
microenvironment (TME) heterogeneity. Using an integrative multi-omics analysis and …

Comprehensive analysis of ZNF family genes in prognosis, immunity, and treatment of esophageal cancer

K Hong, Q Yang, H Yin, N Wei, W Wang, B Yu - BMC cancer, 2023 - Springer
Background As a common malignant tumor, esophageal carcinoma (ESCA) has a low early
diagnosis rate and poor prognosis. This study aimed to construct the prognostic features …

[HTML][HTML] Mutational signature of mtDNA confers mechanistic insight into oxidative metabolism remodeling in colorectal cancer

W Guo, Y Liu, X Ji, S Guo, F Xie, Y Chen, K Zhou… - Theranostics, 2023 - ncbi.nlm.nih.gov
Rationale: Mitochondrial dysfunction caused by mitochondrial DNA (mtDNA) mutations and
subsequent metabolic defects are closely involved in tumorigenesis and progression in a …

Machine learning-based extrachromosomal DNA identification in large-scale cohorts reveals its clinical implications in cancer

S Wang, CY Wu, MM He, JX Yong, YX Chen… - Nature …, 2024 - nature.com
The clinical implications of extrachromosomal DNA (ecDNA) in cancer therapy remain
largely elusive. Here, we present a comprehensive analysis of ecDNA amplification spectra …