Tools for genetic studies in experimental populations of polyploids

PM Bourke, RE Voorrips, RGF Visser… - Frontiers in plant …, 2018 - frontiersin.org
Polyploid organisms carry more than two copies of each chromosome, a condition rarely
tolerated in animals but which occurs relatively frequently in the plant kingdom. One of the …

Integration of advanced technologies for plant variety and cultivar identification

MMF Azizi, HY Lau, N Abu-Bakar - Journal of biosciences, 2021 - Springer
Identification of plant variety and cultivar is pivotal in the agricultural sector due to the
abundance of plant varieties and cultivars developed in many crop species. However, plant …

Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of Gossypium spp.

AM Hulse-Kemp, J Lemm, J Plieske… - G3: Genes …, 2015 - academic.oup.com
High-throughput genotyping arrays provide a standardized resource for plant breeding
communities that are useful for a breadth of applications including high-density genetic …

A MAGIC population-based genome-wide association study reveals functional association of GhRBB1_A07 gene with superior fiber quality in cotton

MS Islam, GN Thyssen, JN Jenkins, L Zeng… - BMC genomics, 2016 - Springer
Background Cotton supplies a great majority of natural fiber for the global textile industry.
The negative correlation between yield and fiber quality has hindered breeders' ability to …

Genome-wide SNP linkage mapping and QTL analysis for fiber quality and yield traits in the upland cotton recombinant inbred lines population

C Li, Y Dong, T Zhao, L Li, C Li, E Yu, L Mei… - Frontiers in plant …, 2016 - frontiersin.org
It is of significance to discover genes related to fiber quality and yield traits and tightly linked
markers for marker-assisted selection (MAS) in cotton breeding. In this study, 188 F8 …

[HTML][HTML] Single nucleotide polymorphism (SNP) discovery and kompetitive allele-specific PCR (KASP) marker development with Korean japonica rice varieties

KS Cheon, J Baek, Y Cho, YM Jeong… - Plant breeding and …, 2018 - plantbreedbio.org
Genome resequencing by next-generation sequencing technology can reveal numerous
single nucleotide polymorphisms (SNPs) within a closely-related cultivar group, which would …

Development of GBTS and KASP panels for genetic diversity, population structure, and fingerprinting of a large collection of broccoli (Brassica oleracea L. var. italica) …

Y Shen, J Wang, RK Shaw, H Yu, X Sheng… - Frontiers in Plant …, 2021 - frontiersin.org
Broccoli (Brassica oleracea var. italica) is one of the most important and nutritious
vegetables widely cultivated in China. In the recent four decades, several improved varieties …

Diversity analysis of cotton (Gossypium hirsutum L.) germplasm using the CottonSNP63K Array

LL Hinze, AM Hulse-Kemp, IW Wilson, QH Zhu… - BMC Plant …, 2017 - Springer
Background Cotton germplasm resources contain beneficial alleles that can be exploited to
develop germplasm adapted to emerging environmental and climate conditions. Accessions …

A GWAS identified a major QTL for resistance to Fusarium wilt (Fusarium oxysporum f. sp. vasinfectum) race 4 in a MAGIC population of Upland cotton and a meta …

Y Zhu, GN Thyssen, A Abdelraheem, Z Teng… - Theoretical and Applied …, 2022 - Springer
Key message A major QTL conferring resistance to Fusarium wilt race 4 in a narrow region
of chromosome D02 was identified in a MAGIC population of 550 RILs of Upland cotton …

Potential of low‐coverage genotyping‐by‐sequencing and imputation for cost‐effective genomic selection in biparental segregating populations

G Gorjanc, JF Dumasy, S Gonen, RC Gaynor… - Crop …, 2017 - Wiley Online Library
Genotyping‐by‐sequencing (GBS) is an alternative genotyping method to single‐nucleotide
polymorphism (SNP) arrays that has received considerable attention in the plant breeding …