Glycoproteomics

I Bagdonaite, SA Malaker, DA Polasky… - Nature Reviews …, 2022 - nature.com
Protein glycosylation involves the co-translational or post-translational addition of glycans to
proteins and is a crucial protein modification in health and disease. The aim of …

[PDF][PDF] Proteogenomic data and resources for pan-cancer analysis

Y Li, Y Dou, FDV Leprevost, Y Geffen, AP Calinawan… - Cancer cell, 2023 - cell.com
Summary The National Cancer Institute's Clinical Proteomic Tumor Analysis Consortium
(CPTAC) investigates tumors from a proteogenomic perspective, creating rich multi-omics …

[PDF][PDF] Proteogenomic characterization of pancreatic ductal adenocarcinoma

L Cao, C Huang, DC Zhou, Y Hu, TM Lih, SR Savage… - Cell, 2021 - cell.com
Pancreatic ductal adenocarcinoma (PDAC) is a highly aggressive cancer with poor patient
survival. Toward understanding the underlying molecular alterations that drive PDAC …

A pragmatic guide to enrichment strategies for mass spectrometry–based glycoproteomics

NM Riley, CR Bertozzi, SJ Pitteri - Molecular & Cellular Proteomics, 2021 - ASBMB
Glycosylation is a prevalent, yet heterogeneous modification with a broad range of
implications in molecular biology. This heterogeneity precludes enrichment strategies that …

Glycoproteomics-based signatures for tumor subtyping and clinical outcome prediction of high-grade serous ovarian cancer

J Pan, Y Hu, S Sun, L Chen, M Schnaubelt… - Nature …, 2020 - nature.com
Inter-tumor heterogeneity is a result of genomic, transcriptional, translational, and post-
translational molecular features. To investigate the roles of protein glycosylation in the …

Glycoinformatics in the artificial intelligence era

D Bojar, F Lisacek - Chemical Reviews, 2022 - ACS Publications
Artificial intelligence (AI) methods have been and are now being increasingly integrated in
prediction software implemented in bioinformatics and its glycoscience branch known as …

Cell-type-specific labeling and profiling of glycans in living mice

X Fan, Q Song, D Sun, Y Hao, J Wang, C Wang… - Nature Chemical …, 2022 - nature.com
Metabolic labeling of glycans with clickable unnatural sugars has enabled glycan analysis in
multicellular systems. However, cell-type-specific labeling of glycans in vivo remains …

[PDF][PDF] Mapping physiological ADP-ribosylation using activated ion electron transfer dissociation

SC Buch-Larsen, IA Hendriks, JM Lodge, M Rykær… - Cell reports, 2020 - cell.com
ADP-ribosylation (ADPr) is a post-translational modification that plays pivotal roles in a wide
range of cellular processes. Mass spectrometry (MS)-based analysis of ADPr under …

O-GlcNAcAtlas: A database of experimentally identified O-GlcNAc sites and proteins

J Ma, Y Li, C Hou, C Wu - Glycobiology, 2021 - academic.oup.com
O-linked β-N-acetylglucosamine (O-GlcNAc) is a post-translational modification (ie, O-
GlcNAcylation) on the serine/threonine residues of proteins. As a unique intracellular …

qPTM: an updated database for PTM dynamics in human, mouse, rat and yeast

K Yu, Y Wang, Y Zheng, Z Liu, Q Zhang… - Nucleic Acids …, 2023 - academic.oup.com
Post-translational modifications (PTMs) are critical molecular mechanisms that regulate
protein functions temporally and spatially in various organisms. Since most PTMs are …