DiseaseMeth version 2.0: a major expansion and update of the human disease methylation database

Y Xiong, Y Wei, Y Gu, S Zhang, J Lyu… - Nucleic acids …, 2017 - academic.oup.com
The human disease methylation database (DiseaseMeth, http://bioinfo. hrbmu. edu.
cn/diseasemeth/) is an interactive database that aims to present the most complete …

Mammalian epigenetic mechanisms

G Zhang, S Pradhan - IUBMB life, 2014 - Wiley Online Library
The mammalian genome is packaged into chromatin that is further compacted into three‐
dimensional structures consisting of distinct functional domains. The higher order structure …

EWAS Atlas: a curated knowledgebase of epigenome-wide association studies

M Li, D Zou, Z Li, R Gao, J Sang, Y Zhang… - Nucleic acids …, 2019 - academic.oup.com
Abstract Epigenome-Wide Association Study (EWAS) has become increasingly significant in
identifying the associations between epigenetic variations and different biological traits. In …

MethHC: a database of DNA methylation and gene expression in human cancer

WY Huang, SD Hsu, HY Huang, YM Sun… - Nucleic acids …, 2015 - academic.oup.com
Abstract We present MethHC (http://MethHC. mbc. nctu. edu. tw), a database comprising a
systematic integration of a large collection of DNA methylation data and mRNA/microRNA …

TSGene: a web resource for tumor suppressor genes

M Zhao, J Sun, Z Zhao - Nucleic acids research, 2013 - academic.oup.com
Tumor suppressor genes (TSGs) are guardian genes that play important roles in controlling
cell proliferation processes such as cell-cycle checkpoints and inducing apoptosis …

[HTML][HTML] Identification of hub genes in prostate cancer using robust rank aggregation and weighted gene co-expression network analysis

Z Song, F Chao, Z Zhuo, Z Ma, W Li, G Chen - Aging (Albany NY), 2019 - ncbi.nlm.nih.gov
The pathogenic mechanisms of prostate cancer (PCa) remain to be defined. In this study, we
utilized the Robust Rank Aggregation (RRA) method to integrate 10 eligible PCa microarray …

Umap and Bismap: quantifying genome and methylome mappability

M Karimzadeh, C Ernst, A Kundaje… - Nucleic acids …, 2018 - academic.oup.com
Short-read sequencing enables assessment of genetic and biochemical traits of individual
genomic regions, such as the location of genetic variation, protein binding and chemical …

Biological databases for human research

D Zou, L Ma, J Yu, Z Zhang - Genomics, proteomics and …, 2015 - academic.oup.com
The completion of the Human Genome Project lays a foundation for systematically studying
the human genome from evolutionary history to precision medicine against diseases. With …

Zinc finger readers of methylated DNA

NO Hudson, BA Buck-Koehntop - Molecules, 2018 - mdpi.com
DNA methylation is a prevalent epigenetic modification involved in regulating a number of
essential cellular processes, including genomic accessibility and transcriptional outcomes …

A review of post-GWAS prioritization approaches

L Hou, H Zhao - Frontiers in genetics, 2013 - frontiersin.org
In the recent decade, high-throughput genotyping and next-generation sequencing
platforms have enabled genome-wide association studies (GWAS) of many complex human …