Graph neural networks and their current applications in bioinformatics

XM Zhang, L Liang, L Liu, MJ Tang - Frontiers in genetics, 2021 - frontiersin.org
Graph neural networks (GNNs), as a branch of deep learning in non-Euclidean space,
perform particularly well in various tasks that process graph structure data. With the rapid …

Graph-based deep learning for medical diagnosis and analysis: past, present and future

D Ahmedt-Aristizabal, MA Armin, S Denman, C Fookes… - Sensors, 2021 - mdpi.com
With the advances of data-driven machine learning research, a wide variety of prediction
problems have been tackled. It has become critical to explore how machine learning and …

Network learning for biomarker discovery

Y Ding, M Fu, P Luo, FX Wu - International Journal of Network Dynamics …, 2023 - sciltp.com
Everything is connected and thus networks are instrumental in not only modeling complex
systems with many components, but also accommodating knowledge about their …

Fuzzy graph convolutional network for hyperspectral image classification

J Xu, K Li, Z Li, Q Chong, H Xing, Q Xing… - Engineering Applications of …, 2024 - Elsevier
Graph convolutional network (GCN) has attracted much attention in the field of hyperspectral
image classification for its excellent feature representation and convolution on arbitrarily …

Graph convolutional network for fMRI analysis based on connectivity neighborhood

L Wang, K Li, XP Hu - Network Neuroscience, 2021 - direct.mit.edu
There have been successful applications of deep learning to functional magnetic resonance
imaging (fMRI), where fMRI data were mostly considered to be structured grids, and spatial …

Machine learning applications on neuroimaging for diagnosis and prognosis of epilepsy: A review

J Yuan, X Ran, K Liu, C Yao, Y Yao, H Wu… - Journal of neuroscience …, 2022 - Elsevier
Abstract Machine learning is playing an increasingly important role in medical image
analysis, spawning new advances in the clinical application of neuroimaging. There have …

Spherical deformable u-net: Application to cortical surface parcellation and development prediction

F Zhao, Z Wu, L Wang, W Lin… - IEEE transactions on …, 2021 - ieeexplore.ieee.org
Convolutional Neural Networks (CNNs) have achieved overwhelming success in learning-
related problems for 2D/3D images in the Euclidean space. However, unlike in the …

Multi stain graph fusion for multimodal integration in pathology

C Dwivedi, S Nofallah, M Pouryahya… - Proceedings of the …, 2022 - openaccess.thecvf.com
In pathology, tissue samples are assessed using multiple staining techniques to enhance
contrast in unique histologic features. In this paper, we introduce a multimodal CNN-GNN …

[HTML][HTML] Deep learning in cortical surface-based neuroimage analysis: a systematic review

F Zhao, Z Wu, G Li - Intelligent Medicine, 2023 - Elsevier
Deep learning approaches, especially convolutional neural networks (CNNs), have become
the method of choice in the field of medical image analysis over the last few years. This …

Learning a cortical parcellation of the brain robust to the MRI segmentation with convolutional neural networks

B Thyreau, Y Taki - Medical image analysis, 2020 - Elsevier
The parcellation of the human cortex into meaningful anatomical units is a common step of
various neuroimaging studies. There have been multiple successful efforts to process …