Different divalent cations alter the kinetics and fidelity of DNA polymerases

AK Vashishtha, J Wang, WH Konigsberg - Journal of Biological Chemistry, 2016 - ASBMB
Divalent metal ions are essential components of DNA polymerases both for catalysis of the
nucleotidyl transfer reaction and for base excision. They occupy two sites, A and B, for DNA …

Manganese: its acquisition by and function in the lactic acid bacteria

F Archibald - CRC Critical reviews in microbiology, 1986 - Taylor & Francis
For many years the lactic acid bacteria have been known to display many unconventional
features in their physiology and biochemistry. These include lack of hemes; extensive use of …

[HTML][HTML] Fidelity of phi 29 DNA polymerase. Comparison between protein-primed initiation and DNA polymerization.

JA Esteban, M Salas, L Blanco - Journal of Biological Chemistry, 1993 - Elsevier
Phi 29 DNA polymerase is able to catalyze two different synthetic reactions: protein-primed
initiation and DNA polymerization. We have studied the fidelity of phi 29 DNA polymerase …

On the fidelity of DNA replication: manganese mutagenesis in vitro

RA Beckman, AS Mildvan, LA Loeb - Biochemistry, 1985 - ACS Publications
Manganese is mutagenic in vivo and in vitro in studies with a variety of enzymes and
templates. Using Escherichia coliDNA polymerase I with poly [d (AT)] and 0X174 DNA …

[HTML][HTML] DNA polymerase mu (Pol μ), homologous to TdT, could act as a DNA mutator in eukaryotic cells

O Domínguez, JF Ruiz, TL de Lera… - The EMBO …, 2000 - embopress.org
A novel DNA polymerase has been identified in human cells. Human DNA polymerase mu
(Pol μ), consisting of 494 amino acids, has 41% identity to terminal …

Poliovirus RNA-Dependent RNA Polymerase (3Dpol):  Pre-Steady-State Kinetic Analysis of Ribonucleotide Incorporation in the Presence of Mg2+

JJ Arnold, CE Cameron - Biochemistry, 2004 - ACS Publications
We have solved the complete kinetic mechanism for correct nucleotide incorporation
catalyzed by the RNA-dependent RNA polymerase from poliovirus, 3Dpol. The phosphoryl …

Incorporation fidelity of the viral RNA-dependent RNA polymerase: a kinetic, thermodynamic and structural perspective

C Castro, JJ Arnold, CE Cameron - Virus research, 2005 - Elsevier
Positive-strand RNA viruses exist as a quasi-species due to the incorporation of mutations
into the viral genome during replication by the virus-encoded RNA-dependent RNA …

Enzymological Characterization of the Signal-Transducing Uridylyltransferase/Uridylyl-Removing Enzyme (EC 2.7.7.59) of Escherichia coli and Its Interaction with the …

P Jiang, JA Peliska, AJ Ninfa - Biochemistry, 1998 - ACS Publications
The uridylyltransferase/uridylyl-removing enzyme (UTase/UR) of Escherichia coli plays an
important role in the regulation of nitrogen assimilation by controlling the uridylylation state …

A Structural Basis for Metal Ion Mutagenicity and Nucleotide Selectivity in Human DNA Polymerase β,

H Pelletier, MR Sawaya, W Wolfle, SH Wilson… - Biochemistry, 1996 - ACS Publications
When crystals of human DNA polymerase β (pol β) complexed with DNA [Pelletier, H.,
Sawaya, MR, Wolfle, W., Wilson, SH, & Kraut, J.(1996) Biochemistry 35, 12742− 12761] are …

Iron: Life's primeval transition metal

JE Johnson, TM Present, JS Valentine - Proceedings of the National …, 2024 - pnas.org
Modern life requires many different metal ions, which enable diverse biochemical functions.
It is commonly assumed that metal ions' environmental availabilities controlled the evolution …