Agrobacterium-mediated transformation as a tool for functional genomics in fungi

CB Michielse, PJJ Hooykaas, CA van den Hondel… - Current genetics, 2005 - Springer
In the era of functional genomics, the need for tools to perform large-scale targeted and
random mutagenesis is increasing. A potential tool is Agrobacterium-mediated fungal …

Developing Aspergillus as a host for heterologous expression

D Lubertozzi, JD Keasling - Biotechnology advances, 2009 - Elsevier
Filamentous fungi have long been used for production of a range of valuable products; with
the advent of molecular biology, it became apparent that these fungi possess considerable …

Programmable repression and activation of bacterial gene expression using an engineered CRISPR-Cas system

D Bikard, W Jiang, P Samai, A Hochschild… - Nucleic acids …, 2013 - academic.oup.com
The ability to artificially control transcription is essential both to the study of gene function
and to the construction of synthetic gene networks with desired properties. Cas9 is an RNA …

A CRISPRi screen in E. coli reveals sequence-specific toxicity of dCas9

L Cui, A Vigouroux, F Rousset, H Varet… - Nature …, 2018 - nature.com
High-throughput CRISPR-Cas9 screens have recently emerged as powerful tools to
decipher gene functions and genetic interactions. Here we use a genome-wide library of …

Genome-wide CRISPR-dCas9 screens in E. coli identify essential genes and phage host factors

F Rousset, L Cui, E Siouve, C Becavin… - PLoS …, 2018 - journals.plos.org
High-throughput genetic screens are powerful methods to identify genes linked to a given
phenotype. The catalytic null mutant of the Cas9 RNA-guided nuclease (dCas9) can be …

PCR-targeted Streptomyces gene replacement identifies a protein domain needed for biosynthesis of the sesquiterpene soil odor geosmin

B Gust, GL Challis, K Fowler… - Proceedings of the …, 2003 - National Acad Sciences
Streptomycetes are high G+ C Gram-positive, antibiotic-producing, mycelial soil bacteria.
The 8.7-Mb Streptomyces coelicolor genome was previously sequenced by using an …

Double-joint PCR: a PCR-based molecular tool for gene manipulations in filamentous fungi

JH Yu, Z Hamari, KH Han, JA Seo… - Fungal genetics and …, 2004 - Elsevier
Gene replacement via homologous double crossover in filamentous fungi requires relatively
long (preferentially> 0.5 kb) flanking regions of the target gene. For this reason, gene …

VelB/VeA/LaeA complex coordinates light signal with fungal development and secondary metabolism

O Bayram, S Krappmann, M Ni, JW Bok, K Helmstaedt… - Science, 2008 - science.org
Differentiation and secondary metabolism are correlated processes in fungi that respond to
light. In Aspergillus nidulans, light inhibits sexual reproduction as well as secondary …

A high-throughput gene knockout procedure for Neurospora reveals functions for multiple transcription factors

HV Colot, G Park, GE Turner… - Proceedings of the …, 2006 - National Acad Sciences
The low rate of homologous recombination exhibited by wild-type strains of filamentous
fungi has hindered development of high-throughput gene knockout procedures for this …

Biogenesis and structure of a type VI secretion membrane core complex

E Durand, VS Nguyen, A Zoued, L Logger… - Nature, 2015 - nature.com
Bacteria share their ecological niches with other microbes. The bacterial type VI secretion
system is one of the key players in microbial competition, as well as being an important …