Diversity within species: interpreting strains in microbiomes
Studying within-species variation has traditionally been limited to culturable bacterial
isolates and low-resolution microbial community fingerprinting. Metagenomic sequencing …
isolates and low-resolution microbial community fingerprinting. Metagenomic sequencing …
Phytoplasma taxonomy: nomenclature, classification, and identification
W Wei, Y Zhao - Biology, 2022 - mdpi.com
Simple Summary Phytoplasmas are vector-borne and graft-transmissible bacteria that cause
various plant diseases, leading to severe economic losses. Since phytoplasmas cannot be …
various plant diseases, leading to severe economic losses. Since phytoplasmas cannot be …
TYGS and LPSN: a database tandem for fast and reliable genome-based classification and nomenclature of prokaryotes
JP Meier-Kolthoff, JS Carbasse… - Nucleic acids …, 2022 - academic.oup.com
Microbial systematics is heavily influenced by genome-based methods and challenged by
an ever increasing number of taxon names and associated sequences in public data …
an ever increasing number of taxon names and associated sequences in public data …
GTDB: an ongoing census of bacterial and archaeal diversity through a phylogenetically consistent, rank normalized and complete genome-based taxonomy
Abstract The Genome Taxonomy Database (GTDB; https://gtdb. ecogenomic. org) provides a
phylogenetically consistent and rank normalized genome-based taxonomy for prokaryotic …
phylogenetically consistent and rank normalized genome-based taxonomy for prokaryotic …
International code of nomenclature of prokaryotes. Prokaryotic code (2022 revision)
International Code of Nomenclature of Prokaryotes. Prokaryotic Code (2022 Revision) |
Microbiology Society 1887 Microbiology Society logo search icon search icon account icon …
Microbiology Society 1887 Microbiology Society logo search icon search icon account icon …
A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae …
The genus Lactobacillus comprises 261 species (at March 2020) that are extremely diverse
at phenotypic, ecological and genotypic levels. This study evaluated the taxonomy of …
at phenotypic, ecological and genotypic levels. This study evaluated the taxonomy of …
A complete domain-to-species taxonomy for Bacteria and Archaea
Abstract The Genome Taxonomy Database is a phylogenetically consistent, genome-based
taxonomy that provides rank-normalized classifications for~ 150,000 bacterial and archaeal …
taxonomy that provides rank-normalized classifications for~ 150,000 bacterial and archaeal …
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy
JP Meier-Kolthoff, M Göker - Nature communications, 2019 - nature.com
Microbial taxonomy is increasingly influenced by genome-based computational methods.
Yet such analyses can be complex and require expert knowledge. Here we introduce TYGS …
Yet such analyses can be complex and require expert knowledge. Here we introduce TYGS …
Scientific Guidance for the submission of dossiers on Food Enzymes
EFSA Panel on Food Contact Materials … - EFSA …, 2021 - Wiley Online Library
Following a request from the European Commission, EFSA developed an updated scientific
guidance to assist applicants in the preparation of applications for food enzymes. This …
guidance to assist applicants in the preparation of applications for food enzymes. This …
Introducing EzAAI: a pipeline for high throughput calculations of prokaryotic average amino acid identity
The average amino acid identity (AAI) is an index of pairwise genomic relatedness, and
multiple studies have proposed its application in prokaryotic taxonomy and related …
multiple studies have proposed its application in prokaryotic taxonomy and related …