Extracting physical chemistry from mechanics: a new approach to investigate DNA interactions with drugs and proteins in single molecule experiments
MS Rocha - Integrative Biology, 2015 - academic.oup.com
In this review we focus on the idea of establishing connections between the mechanical
properties of DNA–ligand complexes and the physical chemistry of DNA–ligand interactions …
properties of DNA–ligand complexes and the physical chemistry of DNA–ligand interactions …
Microfluidic-based solid phase extraction of cell free DNA
Cell-free DNA (cfDNA) is a liquid biopsy marker that can carry signatures (ie, mutations)
associated with certain pathological conditions. Therefore, the extraction of cfDNA from a …
associated with certain pathological conditions. Therefore, the extraction of cfDNA from a …
[HTML][HTML] Recent development of nucleic acid nanosensors to detect sequence-specific binding interactions: From metal ions, small molecules to proteins and …
DNA carries important genetic instructions and plays vital roles in regulating biological
activities in living cells. Proteins such as transcription factors binds to DNA to regulate the …
activities in living cells. Proteins such as transcription factors binds to DNA to regulate the …
[HTML][HTML] A comprehensive biophysical analysis of the effect of DNA binding drugs on protamine-induced DNA condensation
DNA condensation is a ubiquitous phenomenon in biology, yet the physical basis for it has
remained elusive. Here, we have explored the mechanism of DNA condensation through the …
remained elusive. Here, we have explored the mechanism of DNA condensation through the …
Ionic mononuclear [Fe] and heterodinuclear [Fe, Ru] bis (diphenylphosphino) alkane complexes: Synthesis, spectroscopy, DFT structures, cytotoxicity, and …
M Odachowski, R Neven, G Perversi, D Romano… - Journal of Inorganic …, 2023 - Elsevier
Abstract Iron (II) and Ru (II) half-sandwich compounds encompass some promising pre-
clinical anticancer agents whose efficacy may be tuned by structural modification of the …
clinical anticancer agents whose efficacy may be tuned by structural modification of the …
[HTML][HTML] Optical Polymorphism of Liquid–Crystalline Dispersions of DNA at High Concentrations of Crowding Polymer
VN Morozov, MA Klimovich, AV Shibaeva… - International Journal of …, 2023 - mdpi.com
Optically active liquid–crystalline dispersions (LCD) of nucleic acids, obtained by polymer-
and salt-induced (psi-) condensation, eg, by mixing of aqueous saline solutions of low …
and salt-induced (psi-) condensation, eg, by mixing of aqueous saline solutions of low …
Force-dependent persistence length of DNA–intercalator complexes measured in single molecule stretching experiments
By using optical tweezers with an adjustable trap stiffness, we have performed systematic
single molecule stretching experiments with two types of DNA–intercalator complexes, in …
single molecule stretching experiments with two types of DNA–intercalator complexes, in …
Cooperative effects on the compaction of DNA fragments by the nucleoid protein H-NS and the crowding agent PEG probed by magnetic tweezers
M Cristofalo, CA Marrano, D Salerno, R Corti… - … et Biophysica Acta (BBA …, 2020 - Elsevier
Background DNA bridging promoted by the H-NS protein, combined with the compaction
induced by cellular crowding, plays a major role in the structuring of the E. coli genome …
induced by cellular crowding, plays a major role in the structuring of the E. coli genome …
[HTML][HTML] Platinum-based drugs and DNA interactions studied by single-molecule and bulk measurements
Platinum-containing molecules are widely used as anticancer drugs. These molecules exert
cytotoxic effects by binding to DNA through various mechanisms. The binding between DNA …
cytotoxic effects by binding to DNA through various mechanisms. The binding between DNA …
Dodecyltrimethylammonium bromide surfactant effects on DNA: Unraveling the competition between electrostatic and hydrophobic interactions
We present a new study on the interaction of the DNA molecule with the surfactant
dodecyltrimethylammonium bromide (DTAB), performed mainly with optical tweezers. Single …
dodecyltrimethylammonium bromide (DTAB), performed mainly with optical tweezers. Single …