Efficient implementation of Monte Carlo algorithms on graphical processing units for simulation of adsorption in porous materials
We present enhancements in Monte Carlo simulation speed and functionality within an open-
source code, gRASPA, which uses graphical processing units (GPUs) to achieve significant …
source code, gRASPA, which uses graphical processing units (GPUs) to achieve significant …
New features of the open source Monte Carlo software Brick-CFCMC: Thermodynamic integration and hybrid trial moves
We present several new major features added to the Monte Carlo (MC) simulation code
Brick-CFCMC for phase-and reaction equilibria calculations (https://gitlab …
Brick-CFCMC for phase-and reaction equilibria calculations (https://gitlab …
Py-MCMD: python software for performing hybrid Monte Carlo/molecular dynamics simulations with GOMC and NAMD
MS Barhaghi, B Crawford, G Schwing… - Journal of chemical …, 2022 - ACS Publications
py-MCMD, an open-source Python software, provides a robust workflow layer that manages
communication of relevant system information between the simulation engines NAMD and …
communication of relevant system information between the simulation engines NAMD and …
MoSDeF-GOMC: Python software for the creation of scientific workflows for the Monte Carlo simulation engine GOMC
B Crawford, U Timalsina, CD Quach… - Journal of Chemical …, 2023 - ACS Publications
MoSDeF-GOMC is a python interface for the Monte Carlo software GOMC to the Molecular
Simulation Design Framework (MoSDeF) ecosystem. MoSDeF-GOMC automates the …
Simulation Design Framework (MoSDeF) ecosystem. MoSDeF-GOMC automates the …
[PDF][PDF] alchemlyb: the simple alchemistry library
Summary alchemlyb is an open-source Python software package for the analysis of
alchemical free energy calculations, an important method in computational chemistry and …
alchemical free energy calculations, an important method in computational chemistry and …
Coarse-Grained Molecular Dynamics Simulation of Cobalt Nanoparticle in the n-Octacosane–Water Mixture: The Effect of Water Concentration and Nanoparticle Size
KD Papavasileiou, LD Peristeras… - The Journal of …, 2022 - ACS Publications
The Fischer–Tropsch synthesis (FTS) is central in the Gas-to-Liquids (GTL) process, which is
commercially used in the production of environmentally benign transportation fuels from …
commercially used in the production of environmentally benign transportation fuels from …
Avoiding pitfalls in molecular simulation of vapor sorption: Example of propane and isobutane in metal–organic frameworks for adsorption cooling applications
This study introduces recommendations for conducting molecular simulations of vapor
adsorption, with an emphasis on enhancing the accuracy, reproducibility, and comparability …
adsorption, with an emphasis on enhancing the accuracy, reproducibility, and comparability …
[PDF][PDF] MoSDeF-dihedral-fit: A lightweight software for fitting dihedrals within MoSDeF
B Crawford, CD Quach, NC Craven… - The Journal of …, 2024 - researchportal.hw.ac.uk
Molecular Mechanics (MM) simulations (eg, molecular dynamics and Monte Carlo) provide a
third method of scientific discovery, adding to the traditional theoretical and experimental …
third method of scientific discovery, adding to the traditional theoretical and experimental …
Force Field for Calculation of the Vapor-Liquid Phase Equilibrium of trans-Decalin
IP Anashkin, AV Klinov - ChemEngineering, 2023 - mdpi.com
Based on the TraPPE force field, previously unknown values of the parameters of the
intermolecular interaction potential of trans-decalin were determined. Parametrization was …
intermolecular interaction potential of trans-decalin were determined. Parametrization was …
Thermal Fluctuations and Framework Flexibility of IRMOF-1 upon CH4 and CO2 Adsorption
Flexibility of metal-organic frameworks (MOFs) plays an important role in their applications
for adsorption separations, energy and gas storage, and drug delivery. Here, we …
for adsorption separations, energy and gas storage, and drug delivery. Here, we …