[HTML][HTML] Simulation-based approaches for drug delivery systems: Navigating advancements, opportunities, and challenges

I Salahshoori, M Golriz, MAL Nobre, S Mahdavi… - Journal of Molecular …, 2024 - Elsevier
Efficient drug delivery systems (DDSs) play a pivotal role in ensuring pharmaceuticals'
targeted and effective administration. However, the intricate interplay between drug …

Improvement of conventional anti-cancer drugs as new tools against multidrug resistant tumors

S Dallavalle, V Dobričić, L Lazzarato, E Gazzano… - Drug Resistance …, 2020 - Elsevier
Multidrug resistance (MDR) is the dominant cause of the failure of cancer chemotherapy.
The design of antitumor drugs that are able to evade MDR is rapidly evolving, showing that …

Fluorescent Flippers: Small‐Molecule Probes to Image Membrane Tension in Living Systems

XX Chen, F Bayard, N Gonzalez‐Sanchis… - Angewandte …, 2023 - Wiley Online Library
Flipper probes have been introduced as small molecule fluorophores to image physical
forces, that is, membrane tension in living systems. Their emergence over one decade is …

Constant ph molecular dynamics simulations: Current status and recent applications

VM de Oliveira, R Liu, J Shen - Current opinion in structural biology, 2022 - Elsevier
Many important protein functions are carried out through proton-coupled conformational
dynamics. Thus, the ability to accurately model protonation states dynamically has wide …

Titratable Martini model for constant pH simulations

F Grünewald, PCT Souza, H Abdizadeh… - The Journal of …, 2020 - pubs.aip.org
In this work, we deliver a proof of concept for a fast method that introduces pH effects into
classical coarse-grained (CG) molecular dynamics simulations. Our approach is based upon …

[HTML][HTML] Membrane permeability of small molecules from unbiased molecular dynamics simulations

A Krämer, A Ghysels, E Wang, RM Venable… - The Journal of …, 2020 - pubs.aip.org
Permeation of many small molecules through lipid bilayers can be directly observed in
molecular dynamics simulations on the nano-and microsecond timescale. While unbiased …

Mechanistic understanding from molecular dynamics in pharmaceutical research 2: lipid membrane in drug design

T Róg, M Girych, A Bunker - Pharmaceuticals, 2021 - mdpi.com
We review the use of molecular dynamics (MD) simulation as a drug design tool in the
context of the role that the lipid membrane can play in drug action, ie, the interaction …

Predictions from First-Principles of Membrane Permeability to Small Molecules: How Useful Are They in Practice?

C Chipot - Journal of Chemical Information and Modeling, 2023 - ACS Publications
Predicting from first-principles the rate of passive permeation of small molecules across the
biological membrane represents a promising strategy for screening lead compounds …

Recent experimental developments in studying passive membrane transport of drug molecules

M Sharifian Gh - Molecular Pharmaceutics, 2021 - ACS Publications
The ability to measure the passive membrane permeation of drug-like molecules is of
fundamental biological and pharmaceutical importance. Of significance, passive diffusion …

The lysosomotropic activity of hydrophobic weak base drugs is mediated via their intercalation into the lysosomal membrane

M Stark, TFD Silva, G Levin, M Machuqueiro… - Cells, 2020 - mdpi.com
Lipophilic weak base therapeutic agents, termed lysosomotropic drugs (LDs), undergo
marked sequestration and concentration within lysosomes, hence altering lysosomal …