Nucleosome structure and function

RK McGinty, S Tan - Chemical reviews, 2015 - ACS Publications
When fully extended, one copy of the three billion base pair human genome reaches a
length of over two meters. Yet, it must be packaged into the nucleus of a cell with an average …

Development and classes of epigenetic drugs for cancer

D Dhanak, P Jackson - Biochemical and biophysical research …, 2014 - Elsevier
Emerging evidence supports an important, etiologic role for epigenetic modifications in
cancer. Various post translational modifications of histone proteins together with DNA …

The role of histone tails in the nucleosome: a computational study

J Erler, R Zhang, L Petridis, X Cheng, JC Smith… - Biophysical journal, 2014 - cell.com
Histone tails play an important role in gene transcription and expression. We present here a
systematic computational study of the role of histone tails in the nucleosome, using replica …

Legionella para-effectors target chromatin and promote bacterial replication

D Schator, S Mondino, J Berthelet, C Di Silvestre… - Nature …, 2023 - nature.com
Legionella pneumophila replicates intracellularly by secreting effectors via a type IV
secretion system. One of these effectors is a eukaryotic methyltransferase (RomA) that …

Dynamics of the nucleosomal histone H3 N-terminal tail revealed by high precision single-molecule FRET

K Lehmann, S Felekyan, R Kühnemuth… - Nucleic Acids …, 2020 - academic.oup.com
Chromatin compaction and gene accessibility are orchestrated by assembly and
disassembly of nucleosomes. Although the disassembly process was widely studied, little is …

CRISPR/Cas9-mediated genome editing of epigenetic factors for cancer therapy

S Yao, Z He, C Chen - Human gene therapy, 2015 - liebertpub.com
Advances in engineered recombinant nuclease have provided facile and reliable methods
for genome editing. Especially with the development of the CRISPR (clustered regularly …

Hydrogen-deuterium exchange coupled to top-and middle-down mass spectrometry reveals histone tail dynamics before and after nucleosome assembly

KR Karch, M Coradin, L Zandarashvili, ZY Kan… - Structure, 2018 - cell.com
Until recently, a major limitation of hydrogen-deuterium exchange mass spectrometry (HDX-
MS) was that resolution of deuterium localization was limited to the length of the peptide …

Survival and evolution of CRiSPR–Cas system in prokaryotes and its applications

MAB Shabbir, H Hao, MZ Shabbir, HI Hussain… - Frontiers in …, 2016 - frontiersin.org
Prokaryotes have developed numerous innate immune mechanisms in order to fend off
bacteriophage or plasmid attack. One of these immune systems is clustered regularly …

[HTML][HTML] Communication of genome regulatory elements in a folded chromosome

SV Razin, AA Gavrilov, ES Ioudinkova, OV Iarovaia - FEBS letters, 2013 - Elsevier
The most popular model of gene activation by remote enhancers postulates that the
enhancers interact directly with target promoters via the looping of intervening DNA …

Studies of the Mechanism of Nucleosome Dynamics: A Review on Multifactorial Regulation from Computational and Experimental Cases

D Shi, Y Huang, C Bai - Polymers, 2023 - mdpi.com
The nucleosome, which organizes the long coil of genomic DNA in a highly condensed,
polymeric way, is thought to be the basic unit of chromosomal structure. As the most …