Breaking RAD: An evaluation of the utility of restriction site‐associated DNA sequencing for genome scans of adaptation

DB Lowry, S Hoban, JL Kelley, KE Lotterhos, LK Reed… - 2017 - Wiley Online Library
Understanding how and why populations evolve is of fundamental importance to molecular
ecology. Restriction site‐associated DNA sequencing (RAD seq), a popular reduced …

Phylogenomic relationships and evolution of polyploid Salix species revealed by RAD sequencing data

ND Wagner, L He, E Hörandl - Frontiers in Plant Science, 2020 - frontiersin.org
Polyploidy is common in the genus Salix. However, little is known about the origin,
parentage and genomic composition of polyploid species because of a lack of suitable …

Evolution and developmental genetics of floral display—a review of progress

Q Ma, W Zhang, QY Xiang - Journal of Systematics and …, 2017 - Wiley Online Library
Angiosperms evolved a great diversity of ways to display their flowers for reproductive
success by variation in floral color, size, shape, scent, arrangements, and flowering time …

Insights into opium poppy (Papaver spp.) genetic diversity from genotyping-by-sequencing analysis

UVT Hong, M Tamiru-Oli, B Hurgobin, CR Okey… - Scientific Reports, 2022 - nature.com
Opium poppy (Papaver somniferum) is one of the world's oldest medicinal plants and a
versatile model system to study secondary metabolism. However, our knowledge of its …

Phylogenomic approaches to deciphering the tree of life.

J Wen, J Liu, S Ge, QYJ Xiang… - Journal of Systematics …, 2015 - search.ebscohost.com
The article explores the origins of polyploid Fothergilla (Hamamelidaceae) collected from
southeastern US and their evolutionary relationships with the diploid plants. It cites the …

Genomic Data Reveals Population Genetic and Demographic History of Magnolia fistulosa (Magnoliaceae), a Plant Species With Extremely Small Populations in …

F Yang, L Cai, Z Dao, W Sun - Frontiers in Plant Science, 2022 - frontiersin.org
Elucidating the genetic background of threatened species is fundamental to their
management and conservation, and investigating the demographic history of these species …

High-density marker profiling confirms ancestral genomes of Avena species and identifies D-genome chromosomes of hexaploid oat

H Yan, WA Bekele, CP Wight, Y Peng… - Theoretical and Applied …, 2016 - Springer
Key message Genome analysis of 27 oat species identifies ancestral groups, delineates the
D genome, and identifies ancestral origin of 21 mapped chromosomes in hexaploid oat …

Causes and analytical impacts of missing data in RADseq phylogenetics: Insights from an African frog (Afrixalus)

M Crotti, CD Barratt, SP Loader, DJ Gower… - Zoologica …, 2019 - Wiley Online Library
Restriction site‐associated DNA sequencing (RADseq) has emerged as a useful tool in
systematics and population genomics. A common feature of RADseq data sets is that they …

Development of a universal and simplified ddRAD library preparation approach for SNP discovery and genotyping in angiosperm plants

GQ Yang, YM Chen, JP Wang, C Guo, L Zhao… - Plant methods, 2016 - Springer
Background The double digest restriction-site associated DNA sequencing technology
(ddRAD-seq) is a reduced representation sequencing technology by sampling genome …

Phylogenomics, biogeography, and evolution of morphology and ecological niche of the eastern Asian–eastern North American Nyssa (Nyssaceae)

W Zhou, QY Xiang, J Wen - Journal of Systematics and …, 2020 - Wiley Online Library
Abstract Nyssa (Nyssaceae, Cornales) represents a classical example of the well‐known
eastern Asian–eastern North American floristic disjunction. The genus consists of three …