Small molecule metabolites: discovery of biomarkers and therapeutic targets
S Qiu, Y Cai, H Yao, C Lin, Y Xie, S Tang… - Signal Transduction and …, 2023 - nature.com
Metabolic abnormalities lead to the dysfunction of metabolic pathways and metabolite
accumulation or deficiency which is well-recognized hallmarks of diseases. Metabolite …
accumulation or deficiency which is well-recognized hallmarks of diseases. Metabolite …
Recent advances in mass spectrometry-based computational metabolomics
The computational metabolomics field brings together computer scientists, bioinformaticians,
chemists, clinicians, and biologists to maximize the impact of metabolomics across a wide …
chemists, clinicians, and biologists to maximize the impact of metabolomics across a wide …
Genome-scale models in human metabologenomics
A Mardinoglu, BØ Palsson - Nature Reviews Genetics, 2024 - nature.com
Metabologenomics integrates metabolomics with other omics data types to comprehensively
study the genetic and environmental factors that influence metabolism. These multi-omics …
study the genetic and environmental factors that influence metabolism. These multi-omics …
Machine learning for the advancement of genome-scale metabolic modeling
Constraint-based modeling (CBM) has evolved as the core systems biology tool to map the
interrelations between genotype, phenotype, and external environment. The recent …
interrelations between genotype, phenotype, and external environment. The recent …
Ten quick tips for avoiding pitfalls in multi-omics data integration analyses
Data are the most important elements of bioinformatics: Computational analysis of
bioinformatics data, in fact, can help researchers infer new knowledge about biology …
bioinformatics data, in fact, can help researchers infer new knowledge about biology …
The Warburg effect explained: integration of enhanced glycolysis with heterogeneous mitochondria to promote cancer cell proliferation
L Alberghina - International Journal of Molecular Sciences, 2023 - mdpi.com
The Warburg effect is the long-standing riddle of cancer biology. How does aerobic
glycolysis, inefficient in producing ATP, confer a growth advantage to cancer cells? A new …
glycolysis, inefficient in producing ATP, confer a growth advantage to cancer cells? A new …
Gene signatures for cancer research: A 25-year retrospective and future avenues
W Liu, H He, D Chicco - PLOS Computational Biology, 2024 - journals.plos.org
Over the past two decades, extensive studies, particularly in cancer analysis through large
datasets like The Cancer Genome Atlas (TCGA), have aimed at improving patient therapies …
datasets like The Cancer Genome Atlas (TCGA), have aimed at improving patient therapies …
Metagenome-scale community metabolic modelling for understanding the role of gut microbiota in human health
Metabolic activities of the microbial population are important to maintain the balance of
almost all the ecosystems on earth. In the human gut environment, these microbial …
almost all the ecosystems on earth. In the human gut environment, these microbial …
Recreating metabolic interactions of the tumour microenvironment
Tumours are heterogeneous tissues containing diverse populations of cells and an
abundant extracellular matrix (ECM). This tumour microenvironment prompts cancer cells to …
abundant extracellular matrix (ECM). This tumour microenvironment prompts cancer cells to …
Construction of multiscale genome-scale metabolic models: Frameworks and challenges
X Bi, Y Liu, J Li, G Du, X Lv, L Liu - Biomolecules, 2022 - mdpi.com
Genome-scale metabolic models (GEMs) are effective tools for metabolic engineering and
have been widely used to guide cell metabolic regulation. However, the single gene–protein …
have been widely used to guide cell metabolic regulation. However, the single gene–protein …