Graph theory-based sequence descriptors as remote homology predictors
Alignment-free (AF) methodologies have increased in popularity in the last decades as
alternative tools to alignment-based (AB) algorithms for performing comparative sequence …
alternative tools to alignment-based (AB) algorithms for performing comparative sequence …
An alignment-free approach for eukaryotic ITS2 annotation and phylogenetic inference
G Agüero-Chapin, A Sánchez-Rodríguez… - PLoS …, 2011 - journals.plos.org
The ITS2 gene class shows a high sequence divergence among its members that have
complicated its annotation and its use for reconstructing phylogenies at a higher …
complicated its annotation and its use for reconstructing phylogenies at a higher …
Exploring the adenylation domain repertoire of nonribosomal peptide synthetases using an ensemble of sequence-search methods
The introduction of two-dimension (2D) graphs and their numerical characterization for
comparative analyses of DNA/RNA and protein sequences without the need of sequence …
comparative analyses of DNA/RNA and protein sequences without the need of sequence …
Alignment-free methods for the detection and specificity prediction of adenylation domains
G Agüero-Chapin, G Pérez-Machado… - … Peptide and Polyketide …, 2016 - Springer
Identifying adenylation domains (A-domains) and their substrate specificity can aid the
detection of nonribosomal peptide synthetases (NRPS) at genome/proteome level and allow …
detection of nonribosomal peptide synthetases (NRPS) at genome/proteome level and allow …
Mapping Biomolecular Sequences: Graphical Representations-Their Origins, Applications and Future Prospects
A Nandy - Combinatorial Chemistry & High Throughput …, 2022 - ingentaconnect.com
The exponential growth in the depositories of biological sequence data has generated an
urgent need to store, retrieve and analyse the data efficiently and effectively for which the …
urgent need to store, retrieve and analyse the data efficiently and effectively for which the …
TI2BioP—Topological Indices to BioPolymers. A Graphical–Numerical Approach for Bioinformatics
G Agüero-Chapin, R Molina-Ruiz… - Recent Advances in …, 2016 - books.google.com
We developed a new graphical–numerical method called TI2BioP (Topological Indices to
BioPolymers) to estimate topological indices (TIs) from two-dimensional (2D) graphical …
BioPolymers) to estimate topological indices (TIs) from two-dimensional (2D) graphical …
A graphical and numerical approach for functional annotation and phylogenetic inference
GA Chapin - 2013 - search.proquest.com
We developed a new graphical/numerical method called TI2BioP (Topological Indices to
BioPolymers) to estimate topological indices (TIs) from two-dimensional (2D) graphical …
BioPolymers) to estimate topological indices (TIs) from two-dimensional (2D) graphical …
Processing hidden Markov models using recurrent neural networks for biological applications
PK Rallabandi - 2013 - etd.uwc.ac.za
In this thesis, we present a novel hybrid architecture by combining the most popular
sequence recognition models such as Recurrent Neural Networks (RNNs) and Hidden …
sequence recognition models such as Recurrent Neural Networks (RNNs) and Hidden …
[PDF][PDF] Exploring the Adenylation Domain Repertoire of
G Agüero-Chapin, R Molina-Ruiz, E Maldonado… - 2013 - academia.edu
The introduction of two-dimension (2D) graphs and their numerical characterization for
comparative analyses of DNA/RNA and protein sequences without the need of sequence …
comparative analyses of DNA/RNA and protein sequences without the need of sequence …
[引用][C] Mé todos grafo-numé ricos de relevancia para la bioinformá tica. Aplicaciones en la biotecnologÃa vegetal y en el descubrimiento de fá rmacos.
GAÃ Chapin - Anales de la Academia de Ciencias de Cuba, 2016