Regulating specificity in enhancer–promoter communication

CC Galouzis, EEM Furlong - Current Opinion in Cell Biology, 2022 - Elsevier
Enhancers are cis-regulatory elements that can activate transcription remotely to regulate a
specific pattern of a gene's expression. Genes typically have many enhancers that are often …

[HTML][HTML] Functions of HP1 proteins in transcriptional regulation

JM Schoelz, NC Riddle - Epigenetics & Chromatin, 2022 - Springer
In eukaryotes, DNA is packaged into chromatin, which presents significant barriers to
transcription. Non-histone chromatin proteins such as the Heterochromatin Protein 1 (HP1) …

Active chromatin and transcription play a key role in chromosome partitioning into topologically associating domains

SV Ulianov, EE Khrameeva, AA Gavrilov… - Genome …, 2016 - genome.cshlp.org
Recent advances enabled by the Hi-C technique have unraveled many principles of
chromosomal folding that were subsequently linked to disease and gene regulation. In …

[HTML][HTML] A Comprehensive Map of Insulator Elements for the Drosophila Genome

N Nègre, CD Brown, PK Shah, P Kheradpour… - PLoS …, 2010 - journals.plos.org
Insulators are DNA sequences that control the interactions among genomic regulatory
elements and act as chromatin boundaries. A thorough understanding of their location and …

Different enhancer classes in Drosophila bind distinct architectural proteins and mediate unique chromatin interactions and 3D architecture

C Cubenas-Potts, MJ Rowley, X Lyu, G Li… - Nucleic acids …, 2017 - academic.oup.com
Eukaryotic gene expression is regulated by enhancer–promoter interactions but the
molecular mechanisms that govern specificity have remained elusive. Genome-wide studies …

[HTML][HTML] Chromatin landscape dictates HSF binding to target DNA elements

MJ Guertin, JT Lis - PLoS genetics, 2010 - journals.plos.org
Sequence-specific transcription factors (TFs) are critical for specifying patterns and levels of
gene expression, but target DNA elements are not sufficient to specify TF binding in vivo. In …

[HTML][HTML] Transcriptional silencers in Drosophila serve a dual role as transcriptional enhancers in alternate cellular contexts

SS Gisselbrecht, A Palagi, JV Kurland, JM Rogers… - Molecular cell, 2020 - cell.com
A major challenge in biology is to understand how complex gene expression patterns are
encoded in the genome. While transcriptional enhancers have been studied extensively, few …

[HTML][HTML] Comprehensive identification and annotation of cell type-specific and ubiquitous CTCF-binding sites in the human genome

H Chen, Y Tian, W Shu, X Bo, S Wang - PloS one, 2012 - journals.plos.org
Chromatin insulators are DNA elements that regulate the level of gene expression either by
preventing gene silencing through the maintenance of heterochromatin boundaries or by …

Insulators and promoters: closer than we think

JR Raab, RT Kamakaka - Nature Reviews Genetics, 2010 - nature.com
Insulators prevent promiscuous gene regulation by restricting the action of enhancers and
silencers. Recent studies have revealed a number of similarities between insulators and …

Two new insulator proteins, Pita and ZIPIC, target CP190 to chromatin

O Maksimenko, M Bartkuhn, V Stakhov… - Genome …, 2015 - genome.cshlp.org
Insulators are multiprotein–DNA complexes that regulate the nuclear architecture. The
Drosophila CP190 protein is a cofactor for the DNA-binding insulator proteins Su (Hw) …