In Silico Studies of Small Molecule Interactions with Enzymes Reveal Aspects of Catalytic Function
R Verma, K Mitchell-Koch - Catalysts, 2017 - mdpi.com
Small molecules, such as solvent, substrate, and cofactor molecules, are key players in
enzyme catalysis. Computational methods are powerful tools for exploring the dynamics and …
enzyme catalysis. Computational methods are powerful tools for exploring the dynamics and …
N1019D Mutant of Limosilactobacillus reuteri 121 4,6-α-Glucanotransferase GtfB Significantly Improved Catalytic Activity
N Wang, J Dong, X Li, B Svensson… - Journal of Agricultural …, 2024 - ACS Publications
Limosilactobacillus reuteri 121 4, 6-α-glucanotransferase GtfB (Lr 121 GtfB), belonging to
glycoside hydrolase family 70 (GH70), synthesizes linear isomalto/malto polysaccharides …
glycoside hydrolase family 70 (GH70), synthesizes linear isomalto/malto polysaccharides …
Active site desolvation and thermostability trade-offs in the evolution of catalytically diverse triazine hydrolases
The desolvation of ionizable residues in the active sites of enzymes and the subsequent
effects on catalysis and thermostability have been studied in model systems, yet little about …
effects on catalysis and thermostability have been studied in model systems, yet little about …
Metal Binding and Activity of Ribonucleotide Reductase Protein R2 Mutants: Conditions for Formation of the Mixed Manganese− Iron Cofactor
A Popovic-Bijelic, N Voevodskaya, V Domkin… - Biochemistry, 2009 - ACS Publications
Class Ic ribonucleotide reductase (RNR) from Chlamydia trachomatis (C. tm.) lacks the
tyrosyl radical and uses a Mn (IV)− Fe (III) cluster for cysteinyl radical initiation in the large …
tyrosyl radical and uses a Mn (IV)− Fe (III) cluster for cysteinyl radical initiation in the large …
Electrostatic interactions play a significant role in the affinity of Saccharomyces cerevisiae phosphoenolpyruvate carboxykinase for Mn2+
C Sepúlveda, A Poch, R Espinoza, E Cardemil - Biochimie, 2010 - Elsevier
Phosphoenolpyruvate (PEP) carboxykinases catalyse the reversible formation of
oxaloacetate (OAA) and ATP (or GTP) from PEP, ADP (or GDP) and CO2. They are activated …
oxaloacetate (OAA) and ATP (or GTP) from PEP, ADP (or GDP) and CO2. They are activated …
[HTML][HTML] Dissecting the functional roles of the conserved NXXE and HXE motifs of the ADP-dependent glucokinase from Thermococcus litoralis
MJ Abarca-Lagunas, JA Rivas-Pardo… - FEBS letters, 2015 - Elsevier
The activity of the ADP-dependent glucokinase from Thermococcus litoralis (TlGK) relies on
the highly conserved motifs NXXE (ie Asn-Xaa-Xaa-Glu) and HXE (ie His-Xaa-Glu). Site …
the highly conserved motifs NXXE (ie Asn-Xaa-Xaa-Glu) and HXE (ie His-Xaa-Glu). Site …
Nature of Protein–CO2 Interactions as Elucidated via Molecular Dynamics
ML Drummond, AK Wilson… - The Journal of Physical …, 2012 - ACS Publications
Rising global temperatures require innovative measures to reduce atmospheric
concentrations of CO2. The most successful carbon capture technology on Earth is the …
concentrations of CO2. The most successful carbon capture technology on Earth is the …
Mutantelec: An In Silico mutation simulation platform for comparative electrostatic potential profiling of proteins
B Valdebenito‐Maturana, JA Reyes‐Suarez… - 2017 - Wiley Online Library
The electrostatic potential plays a key role in many biological processes like determining the
affinity of a ligand to a given protein target, and they are responsible for the catalytic activity …
affinity of a ligand to a given protein target, and they are responsible for the catalytic activity …
Cloning and characterization of Chlorobium tepidum ferritin
The Chlorobium tepidum ferritin (CtFtn) gene was synthesized and cloned into a pET3a
expression vector (Novagen). CtFtn was expressed in Escherichia coli and purified to …
expression vector (Novagen). CtFtn was expressed in Escherichia coli and purified to …
Relevance of phenylalanine 216 in the affinity of Saccharomyces cerevisiae phosphoenolpyruvate carboxykinase for Mn(II)
A Yévenes, FD González-Nilo, E Cardemil - The Protein Journal, 2007 - Springer
Saccharomyces cerevisiae phosphoenolpyruvate (PEP) carboxykinase catalyzes the
reversible formation of oxaloacetate and adenosine triphosphate from PEP, adenosine …
reversible formation of oxaloacetate and adenosine triphosphate from PEP, adenosine …