In-cell structural biology by NMR: the benefits of the atomic scale

FX Theillet - Chemical reviews, 2022 - ACS Publications
In-cell structural biology aims at extracting structural information about proteins or nucleic
acids in their native, cellular environment. This emerging field holds great promise and is …

Liquid–liquid phase separation by intrinsically disordered protein regions of viruses: Roles in viral life cycle and control of virus–host interactions

S Brocca, R Grandori, S Longhi, V Uversky - International Journal of …, 2020 - mdpi.com
Intrinsically disordered proteins (IDPs) are unable to adopt a unique 3D structure under
physiological conditions and thus exist as highly dynamic conformational ensembles. IDPs …

IUPred3: prediction of protein disorder enhanced with unambiguous experimental annotation and visualization of evolutionary conservation

G Erdős, M Pajkos, Z Dosztányi - Nucleic acids research, 2021 - academic.oup.com
Intrinsically disordered proteins and protein regions (IDPs/IDRs) exist without a single well-
defined conformation. They carry out important biological functions with multifaceted roles …

The eukaryotic linear motif resource: 2022 release

M Kumar, S Michael, J Alvarado-Valverde… - Nucleic acids …, 2022 - academic.oup.com
Almost twenty years after its initial release, the Eukaryotic Linear Motif (ELM) resource
remains an invaluable source of information for the study of motif-mediated protein-protein …

flDPnn: Accurate intrinsic disorder prediction with putative propensities of disorder functions

G Hu, A Katuwawala, K Wang, Z Wu… - Nature …, 2021 - nature.com
Identification of intrinsic disorder in proteins relies in large part on computational predictors,
which demands that their accuracy should be high. Since intrinsic disorder carries out a …

Critical assessment of protein intrinsic disorder prediction

M Necci, D Piovesan, SCE Tosatto - Nature methods, 2021 - nature.com
Intrinsically disordered proteins, defying the traditional protein structure–function paradigm,
are a challenge to study experimentally. Because a large part of our knowledge rests on …

MobiDB: intrinsically disordered proteins in 2021

D Piovesan, M Necci, N Escobedo… - Nucleic acids …, 2021 - academic.oup.com
The MobiDB database (URL: https://mobidb. org/) provides predictions and annotations for
intrinsically disordered proteins. Here, we report recent developments implemented in …

Widespread occurrence of the droplet state of proteins in the human proteome

M Hardenberg, A Horvath, V Ambrus… - Proceedings of the …, 2020 - National Acad Sciences
A wide range of proteins have been reported to condensate into a dense liquid phase,
forming a reversible droplet state. Failure in the control of the droplet state can lead to the …

Analyzing protein disorder with IUPred2A

G Erdős, Z Dosztányi - Current protocols in bioinformatics, 2020 - Wiley Online Library
IUPred2A is a combined prediction tool designed to discover intrinsically disordered or
conditionally disordered proteins and protein regions. Intrinsically disordered regions exist …

The human O-GlcNAcome database and meta-analysis

E Wulff-Fuentes, RR Berendt, L Massman, L Danner… - Scientific data, 2021 - nature.com
Abstract Over the past 35 years,~ 1700 articles have characterized protein O-GlcNAcylation.
Found in almost all living organisms, this post-translational modification of serine and …