An overview of watershed algorithm implementations in open source libraries

AS Kornilov, IV Safonov - Journal of Imaging, 2018 - mdpi.com
Watershed is a widespread technique for image segmentation. Many researchers apply the
method implemented in open source libraries without a deep understanding of its …

A review of watershed implementations for segmentation of volumetric images

A Kornilov, I Safonov, I Yakimchuk - Journal of Imaging, 2022 - mdpi.com
Watershed is a widely used image segmentation algorithm. Most researchers understand
just an idea of this method: a grayscale image is considered as topographic relief, which is …

Pulmonary fibrosis distal airway epithelia are dynamically and structurally dysfunctional

IT Stancil, JE Michalski, D Davis-Hall, HW Chu… - Nature …, 2021 - nature.com
The airway epithelium serves as the interface between the host and external environment. In
many chronic lung diseases, the airway is the site of substantial remodeling after injury …

Mahotas: Open source software for scriptable computer vision

LP Coelho - arXiv preprint arXiv:1211.4907, 2012 - arxiv.org
Mahotas is a computer vision library for Python. It contains traditional image processing
functionality such as filtering and morphological operations as well as more modern …

Interleukin-6–dependent epithelial fluidization initiates fibrotic lung remodeling

IT Stancil, JE Michalski, CE Hennessy… - Science translational …, 2022 - science.org
Chronic disease results from the failure of tissues to maintain homeostasis. In the lung,
coordinated repair of the epithelium is essential for preserving homeostasis. In animal …

Effect of substrate stiffness on friction in collective cell migration

K Vazquez, A Saraswathibhatla, J Notbohm - Scientific Reports, 2022 - nature.com
In collective cell migration, the motion results from forces produced by each cell and
transmitted to the neighboring cells and to the substrate. Because inertia is negligible and …

EpiTools: an open-source image analysis toolkit for quantifying epithelial growth dynamics

D Heller, A Hoppe, S Restrepo, L Gatti, AL Tournier… - Developmental cell, 2016 - cell.com
Epithelia grow and undergo extensive rearrangements to achieve their final size and shape.
Imaging the dynamics of tissue growth and morphogenesis is now possible with advances in …

CellFIT: a cellular force-inference toolkit using curvilinear cell boundaries

GW Brodland, JH Veldhuis, S Kim, M Perrone… - PloS one, 2014 - journals.plos.org
Mechanical forces play a key role in a wide range of biological processes, from
embryogenesis to cancer metastasis, and there is considerable interest in the intuitive …

Deep learning recognition of diseased and normal cell representation

MS Iqbal, I Ahmad, L Bin, S Khan… - Transactions on …, 2021 - Wiley Online Library
Cell classification refers to detecting normal and diseased cells from small amount of data.
Sometimes, classification of cells becomes difficult because some cells fall into more than …

Unjamming and collective migration in MCF10A breast cancer cell lines

JH Kim, AF Pegoraro, A Das, SA Koehler… - Biochemical and …, 2020 - Elsevier
Each cell comprising an intact, healthy, confluent epithelial layer ordinarily remains
sedentary, firmly adherent to and caged by its neighbors, and thus defines an elemental …