An overview of watershed algorithm implementations in open source libraries
AS Kornilov, IV Safonov - Journal of Imaging, 2018 - mdpi.com
Watershed is a widespread technique for image segmentation. Many researchers apply the
method implemented in open source libraries without a deep understanding of its …
method implemented in open source libraries without a deep understanding of its …
A review of watershed implementations for segmentation of volumetric images
A Kornilov, I Safonov, I Yakimchuk - Journal of Imaging, 2022 - mdpi.com
Watershed is a widely used image segmentation algorithm. Most researchers understand
just an idea of this method: a grayscale image is considered as topographic relief, which is …
just an idea of this method: a grayscale image is considered as topographic relief, which is …
Pulmonary fibrosis distal airway epithelia are dynamically and structurally dysfunctional
IT Stancil, JE Michalski, D Davis-Hall, HW Chu… - Nature …, 2021 - nature.com
The airway epithelium serves as the interface between the host and external environment. In
many chronic lung diseases, the airway is the site of substantial remodeling after injury …
many chronic lung diseases, the airway is the site of substantial remodeling after injury …
Mahotas: Open source software for scriptable computer vision
LP Coelho - arXiv preprint arXiv:1211.4907, 2012 - arxiv.org
Mahotas is a computer vision library for Python. It contains traditional image processing
functionality such as filtering and morphological operations as well as more modern …
functionality such as filtering and morphological operations as well as more modern …
Interleukin-6–dependent epithelial fluidization initiates fibrotic lung remodeling
IT Stancil, JE Michalski, CE Hennessy… - Science translational …, 2022 - science.org
Chronic disease results from the failure of tissues to maintain homeostasis. In the lung,
coordinated repair of the epithelium is essential for preserving homeostasis. In animal …
coordinated repair of the epithelium is essential for preserving homeostasis. In animal …
Effect of substrate stiffness on friction in collective cell migration
In collective cell migration, the motion results from forces produced by each cell and
transmitted to the neighboring cells and to the substrate. Because inertia is negligible and …
transmitted to the neighboring cells and to the substrate. Because inertia is negligible and …
EpiTools: an open-source image analysis toolkit for quantifying epithelial growth dynamics
D Heller, A Hoppe, S Restrepo, L Gatti, AL Tournier… - Developmental cell, 2016 - cell.com
Epithelia grow and undergo extensive rearrangements to achieve their final size and shape.
Imaging the dynamics of tissue growth and morphogenesis is now possible with advances in …
Imaging the dynamics of tissue growth and morphogenesis is now possible with advances in …
CellFIT: a cellular force-inference toolkit using curvilinear cell boundaries
Mechanical forces play a key role in a wide range of biological processes, from
embryogenesis to cancer metastasis, and there is considerable interest in the intuitive …
embryogenesis to cancer metastasis, and there is considerable interest in the intuitive …
Deep learning recognition of diseased and normal cell representation
Cell classification refers to detecting normal and diseased cells from small amount of data.
Sometimes, classification of cells becomes difficult because some cells fall into more than …
Sometimes, classification of cells becomes difficult because some cells fall into more than …
Unjamming and collective migration in MCF10A breast cancer cell lines
JH Kim, AF Pegoraro, A Das, SA Koehler… - Biochemical and …, 2020 - Elsevier
Each cell comprising an intact, healthy, confluent epithelial layer ordinarily remains
sedentary, firmly adherent to and caged by its neighbors, and thus defines an elemental …
sedentary, firmly adherent to and caged by its neighbors, and thus defines an elemental …