Renal function in newly diagnosed multiple myeloma—a demographic study of 1353 patients

LM Knudsen, E Hippe, M Hjorth… - European journal of …, 1994 - Wiley Online Library
This study describes the occurrence of renal failure among 1353 newly diagnosed cases of
multiple myeloma. Renal function was evaluated by serum creatinine concentration in 1353 …

[HTML][HTML] Evolutionary analyses of gap junction protein families

F Abascal, R Zardoya - Biochimica et Biophysica Acta (BBA) …, 2013 - Elsevier
Gap junctions are intercellular channels that link the cytoplasm of neighboring cells in
animals, enabling straight passage of ions and small molecules. Two different protein …

Structure prediction for CASP8 with all‐atom refinement using Rosetta

S Raman, R Vernon, J Thompson… - Proteins: Structure …, 2009 - Wiley Online Library
We describe predictions made using the Rosetta structure prediction methodology for the
Eighth Critical Assessment of Techniques for Protein Structure Prediction. Aggressive …

Overlapping genes produce proteins with unusual sequence properties and offer insight into de novo protein creation

C Rancurel, M Khosravi, AK Dunker… - Journal of …, 2009 - Am Soc Microbiol
It is widely assumed that new proteins are created by duplication, fusion, or fission of
existing coding sequences. Another mechanism of protein birth is provided by overlapping …

Fido, a novel AMPylation domain common to fic, doc, and AvrB

LN Kinch, ML Yarbrough, K Orth, NV Grishin - PloS one, 2009 - journals.plos.org
Background The Vibrio parahaemolyticus type III secreted effector VopS contains a fic
domain that covalently modifies Rho GTPase threonine with AMP to inhibit downstream …

Template-based protein modeling: recent methodological advances

PR Daga, RY Patel, RJ Doerksen - Current topics in medicinal …, 2010 - ingentaconnect.com
Protein modeling has been a very challenging problem in drug discovery and computational
biology. The latest advances and progress in computational power have helped to solve this …

The human Ago2 MC region does not contain an eIF4E-like mRNA cap binding motif

LN Kinch, NV Grishin - Biology direct, 2009 - Springer
Abstract Background Argonaute (Ago) proteins interact with small regulatory RNAs to
mediate gene regulatory pathways. A recent report by Kiriakidou et al.[1] describes an MC …

Methods of remote homology detection can be combined to increase coverage by 10% in the midnight zone

AJ Reid, C Yeats, CA Orengo - Bioinformatics, 2007 - academic.oup.com
Motivation: A recent development in sequence-based remote homologue detection is the
introduction of profile–profile comparison methods. These are more powerful than previous …

DescFold: a web server for protein fold recognition

RX Yan, JN Si, C Wang, Z Zhang - BMC bioinformatics, 2009 - Springer
Background Machine learning-based methods have been proven to be powerful in
developing new fold recognition tools. In our previous work [Zhang, Kochhar and Grigorov …

Methods for sequence–structure alignment

Č Venclovas - Homology Modeling: Methods and Protocols, 2012 - Springer
Homology modeling is based on the observation that related protein sequences adopt
similar three-dimensional structures. Hence, a homology model of a protein can be derived …