Multi-parent populations in crops: a toolbox integrating genomics and genetic mapping with breeding

MF Scott, O Ladejobi, S Amer, AR Bentley, J Biernaskie… - Heredity, 2020 - nature.com
Crop populations derived from experimental crosses enable the genetic dissection of
complex traits and support modern plant breeding. Among these, multi-parent populations …

The advantages and limitations of trait analysis with GWAS: a review

A Korte, A Farlow - Plant methods, 2013 - Springer
Over the last 10 years, high-density SNP arrays and DNA re-sequencing have illuminated
the majority of the genotypic space for a number of organisms, including humans, maize …

1,135 genomes reveal the global pattern of polymorphism in Arabidopsis thaliana

C Alonso-Blanco, J Andrade, C Becker, F Bemm… - Cell, 2016 - cell.com
Arabidopsis thaliana serves as a model organism for the study of fundamental physiological,
cellular, and molecular processes. It has also greatly advanced our understanding of …

Characterization of polyploid wheat genomic diversity using a high‐density 90 000 single nucleotide polymorphism array

S Wang, D Wong, K Forrest, A Allen… - Plant biotechnology …, 2014 - Wiley Online Library
High‐density single nucleotide polymorphism (SNP) genotyping arrays are a powerful tool
for studying genomic patterns of diversity, inferring ancestral relationships between …

Breaking RAD: An evaluation of the utility of restriction site‐associated DNA sequencing for genome scans of adaptation

DB Lowry, S Hoban, JL Kelley, KE Lotterhos, LK Reed… - 2017 - Wiley Online Library
Understanding how and why populations evolve is of fundamental importance to molecular
ecology. Restriction site‐associated DNA sequencing (RAD seq), a popular reduced …

Genome-wide association studies in plant pathosystems: success or failure?

C Demirjian, F Vailleau, R Berthomé, F Roux - Trends in plant science, 2023 - cell.com
Harnessing natural genetic variation is an established alternative to artificial genetic
variation for investigating the molecular dialog between partners in plant pathosystems …

DNA methylation in Arabidopsis has a genetic basis and shows evidence of local adaptation

MJ Dubin, P Zhang, D Meng, MS Remigereau… - elife, 2015 - elifesciences.org
Epigenome modulation potentially provides a mechanism for organisms to adapt, within and
between generations. However, neither the extent to which this occurs, nor the mechanisms …

Population genomic and genome-wide association studies of agroclimatic traits in sorghum

GP Morris, P Ramu, SP Deshpande… - Proceedings of the …, 2013 - National Acad Sciences
Accelerating crop improvement in sorghum, a staple food for people in semiarid regions
across the developing world, is key to ensuring global food security in the context of climate …

Genome-wide association study of 107 phenotypes in Arabidopsis thaliana inbred lines

S Atwell, YS Huang, BJ Vilhjálmsson, G Willems… - Nature, 2010 - nature.com
Although pioneered by human geneticists as a potential solution to the challenging problem
of finding the genetic basis of common human diseases,, genome-wide association (GWA) …

Whole-genome sequencing of multiple Arabidopsis thaliana populations

J Cao, K Schneeberger, S Ossowski, T Günther… - Nature …, 2011 - nature.com
The plant Arabidopsis thaliana occurs naturally in many different habitats throughout
Eurasia. As a foundation for identifying genetic variation contributing to adaptation to diverse …