Big data application in biomedical research and health care: a literature review

J Luo, M Wu, D Gopukumar… - Biomedical informatics …, 2016 - journals.sagepub.com
Big data technologies are increasingly used for biomedical and health-care informatics
research. Large amounts of biological and clinical data have been generated and collected …

[HTML][HTML] A comprehensive survey of deep learning in the field of medical imaging and medical natural language processing: Challenges and research directions

B Pandey, DK Pandey, BP Mishra… - Journal of King Saud …, 2022 - Elsevier
The extensive growth of data in the health domain has increased the utility of Deep Learning
in health. Deep learning is a highly advanced successor of artificial neural networks, having …

Graph embedding on biomedical networks: methods, applications and evaluations

X Yue, Z Wang, J Huang, S Parthasarathy… - …, 2020 - academic.oup.com
Motivation Graph embedding learning that aims to automatically learn low-dimensional
node representations, has drawn increasing attention in recent years. To date, most recent …

[HTML][HTML] Deep patient: an unsupervised representation to predict the future of patients from the electronic health records

R Miotto, L Li, BA Kidd, JT Dudley - Scientific reports, 2016 - nature.com
Secondary use of electronic health records (EHRs) promises to advance clinical research
and better inform clinical decision making. Challenges in summarizing and representing …

Deep representation learning of electronic health records to unlock patient stratification at scale

I Landi, BS Glicksberg, HC Lee, S Cherng… - NPJ digital …, 2020 - nature.com
Deriving disease subtypes from electronic health records (EHRs) can guide next-generation
personalized medicine. However, challenges in summarizing and representing patient data …

Advances in electronic phenotyping: from rule-based definitions to machine learning models

JM Banda, M Seneviratne… - Annual review of …, 2018 - annualreviews.org
With the widespread adoption of electronic health records (EHRs), large repositories of
structured and unstructured patient data are becoming available to conduct observational …

[HTML][HTML] Clinical data reuse or secondary use: current status and potential future progress

SM Meystre, C Lovis, T Bürkle… - Yearbook of medical …, 2017 - thieme-connect.com
Objective: To perform a review of recent research in clinical data reuse or secondary use,
and envision future advances in this field. Methods: The review is based on a large literature …

Novel data‐mining methodologies for adverse drug event discovery and analysis

R Harpaz, W DuMouchel, NH Shah… - Clinical …, 2012 - Wiley Online Library
An important goal of the health system is to identify new adverse drug events (ADEs) in the
postapproval period. Data‐mining methods that can transform data into meaningful …

A curated and standardized adverse drug event resource to accelerate drug safety research

JM Banda, L Evans, RS Vanguri, NP Tatonetti… - Scientific data, 2016 - nature.com
Identification of adverse drug reactions (ADRs) during the post-marketing phase is one of
the most important goals of drug safety surveillance. Spontaneous reporting systems (SRS) …

“Big data” and the electronic health record

MK Ross, W Wei… - Yearbook of medical …, 2014 - thieme-connect.com
Objectives: Implementation of Electronic Health Record (EHR) systems continues to expand.
The massive number of patient encounters results in high amounts of stored data …