Abstract Biological Pathway Exchange (BioPAX) is a standard language to represent
biological pathways at the molecular and cellular level and to facilitate the exchange of …

Most of the published quantitative models in biology are lost for the community because they
are either not made available or they are insufficiently characterized to allow them to be …

The complex language of eukaryotic gene expression remains incompletely understood.
Despite the importance suggested by many proteins variants statistically associated with …

Proteomics is the study of the function of all expressed proteins. Tremendous progress has
been made in the past few years in generating large-scale data sets for protein–protein …

Abstract The Biomolecular Interaction Network Database (BIND: http://bind. ca) archives
biomolecular interaction, complex and pathway information. A web-based system is …

Protein phosphorylation is estimated to affect 30% of the proteome and is a major regulatory
mechanism that controls many basic cellular processes,,. Until recently, our biochemical …

Background Interaction data for a given protein may be spread across multiple databases.
We set out to create a unifying index that would facilitate searching for these data and that …

We investigate the relationship of protein-protein interactions with mRNA expression levels,
by integrating a variety of data sources for yeast. We focus on known protein complexes that …

Motivation: Most approaches in predicting protein function from protein–protein interaction
data utilize the observation that a protein often share functions with proteins that interacts …

A major goal of proteomics is the complete description of the protein interaction network
underlying cell physiology. A large number of small scale and, more recently, large-scale …