On the use of deep learning for computational imaging

G Barbastathis, A Ozcan, G Situ - Optica, 2019 - opg.optica.org
Since their inception in the 1930–1960s, the research disciplines of computational imaging
and machine learning have followed parallel tracks and, during the last two decades …

Applications, promises, and pitfalls of deep learning for fluorescence image reconstruction

C Belthangady, LA Royer - Nature methods, 2019 - nature.com
Deep learning is becoming an increasingly important tool for image reconstruction in
fluorescence microscopy. We review state-of-the-art applications such as image restoration …

Sparse deconvolution improves the resolution of live-cell super-resolution fluorescence microscopy

W Zhao, S Zhao, L Li, X Huang, S Xing, Y Zhang… - Nature …, 2022 - nature.com
A main determinant of the spatial resolution of live-cell super-resolution (SR) microscopes is
the maximum photon flux that can be collected. To further increase the effective resolution …

ImageJ2: ImageJ for the next generation of scientific image data

CT Rueden, J Schindelin, MC Hiner, BE DeZonia… - BMC …, 2017 - Springer
Background ImageJ is an image analysis program extensively used in the biological
sciences and beyond. Due to its ease of use, recordable macro language, and extensible …

[HTML][HTML] DeconvolutionLab2: An open-source software for deconvolution microscopy

D Sage, L Donati, F Soulez, D Fortun, G Schmit, A Seitz… - Methods, 2017 - Elsevier
Images in fluorescence microscopy are inherently blurred due to the limit of diffraction of
light. The purpose of deconvolution microscopy is to compensate numerically for this …

Biomolecular condensates create phospholipid-enriched microenvironments

JG Dumelie, Q Chen, D Miller, N Attarwala… - Nature Chemical …, 2024 - nature.com
Proteins and RNA can phase separate from the aqueous cellular environment to form
subcellular compartments called condensates. This process results in a protein–RNA …

Immotile cilia mechanically sense the direction of fluid flow for left-right determination

TA Katoh, T Omori, K Mizuno, X Sai, K Minegishi… - Science, 2023 - science.org
Immotile cilia at the ventral node of mouse embryos are required for sensing leftward fluid
flow that breaks left-right symmetry of the body. However, the flow-sensing mechanism has …

Incorporating the image formation process into deep learning improves network performance

Y Li, Y Su, M Guo, X Han, J Liu, HD Vishwasrao, X Li… - Nature …, 2022 - nature.com
Abstract We present Richardson–Lucy network (RLN), a fast and lightweight deep learning
method for three-dimensional fluorescence microscopy deconvolution. RLN combines the …

A pipeline for multidimensional confocal analysis of mitochondrial morphology, function, and dynamics in pancreatic β-cells

A Chaudhry, R Shi, DS Luciani - American Journal of …, 2020 - journals.physiology.org
Live-cell imaging of mitochondrial function and dynamics can provide vital insights into both
physiology and pathophysiology, including of metabolic diseases like type 2 diabetes …

[图书][B] The image processing handbook

JC Russ - 2006 - taylorfrancis.com
Now in its fifth edition, John C. Russ's monumental image processing reference is an even
more complete, modern, and hands-on tool than ever before. The Image Processing …