Metagenomics: genomic analysis of microbial communities
CS Riesenfeld, PD Schloss, J Handelsman - Annu. Rev. Genet., 2004 - annualreviews.org
▪ Abstract Uncultured microorganisms comprise the majority of the planet's biological
diversity. Microorganisms represent two of the three domains of life and contain vast …
diversity. Microorganisms represent two of the three domains of life and contain vast …
Impact of genomics on the understanding of microbial evolution and classification: the importance of Darwin's views on classification
RS Gupta - FEMS microbiology reviews, 2016 - academic.oup.com
Analyses of genome sequences, by some approaches, suggest that the widespread
occurrence of horizontal gene transfers (HGTs) in prokaryotes disguises their evolutionary …
occurrence of horizontal gene transfers (HGTs) in prokaryotes disguises their evolutionary …
The Complete Genome Sequence of Fibrobacter succinogenes S85 Reveals a Cellulolytic and Metabolic Specialist
Fibrobacter succinogenes is an important member of the rumen microbial community that
converts plant biomass into nutrients usable by its host. This bacterium, which is also one of …
converts plant biomass into nutrients usable by its host. This bacterium, which is also one of …
The deep archaeal roots of eukaryotes
N Yutin, KS Makarova, SL Mekhedov… - Molecular biology …, 2008 - academic.oup.com
The set of conserved eukaryotic protein-coding genes includes distinct subsets one of which
appears to be most closely related to and, by inference, derived from archaea, whereas …
appears to be most closely related to and, by inference, derived from archaea, whereas …
Critical issues in bacterial phylogeny
RS Gupta, E Griffiths - Theoretical population biology, 2002 - Elsevier
To understand bacterial phylogeny, it is essential that the following two critical issues be
resolved:(i) development of well-defined (molecular) criteria for identifying the main groups …
resolved:(i) development of well-defined (molecular) criteria for identifying the main groups …
The Phylogeny and Signature Sequences Characteristics of Fibrobacteres, Chlorobi, and Bacteroidetes
RS Gupta - Critical reviews in microbiology, 2004 - Taylor & Francis
Fibrobacteres, Chlorobi, and Bacteroidetes (FCB group) comprise three main bacterial phyla
recognized on the basis of 16S rRNA trees. Presently, there are no distinctive biochemical or …
recognized on the basis of 16S rRNA trees. Presently, there are no distinctive biochemical or …
Focused Metabolism of β-Glucans by the Soil Bacteroidetes Species Chitinophaga pinensis
The genome and natural habitat of Chitinophaga pinensis suggest it has the ability to
degrade a wide variety of carbohydrate-based biomass. Complementing our earlier …
degrade a wide variety of carbohydrate-based biomass. Complementing our earlier …
Identification of conserved indels that are useful for classification and evolutionary studies
RS Gupta - Methods in microbiology, 2014 - Elsevier
Phylogenetic treeing approaches for the classification of organisms have a number of
important limitations. The most significant of these drawbacks is that different groups/taxa …
important limitations. The most significant of these drawbacks is that different groups/taxa …
A mitochondrial-like aconitase in the bacterium Bacteroides fragilis: Implications for the evolution of the mitochondrial Krebs cycle
AD Baughn, MH Malamy - Proceedings of the National …, 2002 - National Acad Sciences
Aconitase and isocitrate dehydrogenase (IDH) enzyme activities were detected in
anaerobically prepared cell extracts of the obligate anaerobe Bacteroides fragilis. The …
anaerobically prepared cell extracts of the obligate anaerobe Bacteroides fragilis. The …
Phylogeny and molecular signatures (conserved proteins and indels) that are specific for the Bacteroidetes and Chlorobi species
RS Gupta, E Lorenzini - BMC evolutionary biology, 2007 - Springer
Abstract Background The Bacteroidetes and Chlorobi species constitute two main groups of
the Bacteria that are closely related in phylogenetic trees. The Bacteroidetes species are …
the Bacteria that are closely related in phylogenetic trees. The Bacteroidetes species are …