A genetic playground for enhancing grain number in cereals

N Sreenivasulu, T Schnurbusch - Trends in plant science, 2012 - cell.com
Improving the yield stability of cereal crops with a view to bolstering global food security is
an important priority. The components of final grain number per plant at harvest are …

Identification and evolution of gene regulatory networks: insights from comparative studies in plants

DM Jones, K Vandepoele - Current opinion in plant biology, 2020 - Elsevier
Highlights•Target genes of orthologous transcription factors can vary greatly.•Duplicated
transcription factor genes frequently have divergent expression patterns.•Comparing gene …

Simultaneous application of heat, drought, and virus to Arabidopsis plants reveals significant shifts in signaling networks

CM Prasch, U Sonnewald - Plant physiology, 2013 - academic.oup.com
Considering global climate change, the incidence of combined drought and heat stress is
likely to increase in the future and will considerably influence plant-pathogen interactions …

[HTML][HTML] A quartet of PIF bHLH factors provides a transcriptionally centered signaling hub that regulates seedling morphogenesis through differential expression …

Y Zhang, O Mayba, A Pfeiffer, H Shi… - PLoS …, 2013 - journals.plos.org
Dark-grown seedlings exhibit skotomorphogenic development. Genetic and molecular
evidence indicates that a quartet of Arabidopsis Phytochrome (phy)-Interacting bHLH …

[HTML][HTML] A gene regulatory network for root epidermis cell differentiation in Arabidopsis

A Bruex, RM Kainkaryam, Y Wieckowski, YH Kang… - PLoS …, 2012 - journals.plos.org
The root epidermis of Arabidopsis provides an exceptional model for studying the molecular
basis of cell fate and differentiation. To obtain a systems-level view of root epidermal cell …

[HTML][HTML] Combinatorial complexity in a transcriptionally centered signaling hub in Arabidopsis

A Pfeiffer, H Shi, JM Tepperman, Y Zhang, PH Quail - Molecular plant, 2014 - cell.com
ABSTRACT A subfamily of four Phytochrome (phy)-Interacting bHLH transcription Factors
(PIFs) collectively promote skotomorphogenic development in dark-grown seedlings. This …

TF2Network: predicting transcription factor regulators and gene regulatory networks in Arabidopsis using publicly available binding site information

SR Kulkarni, D Vaneechoutte… - Nucleic acids …, 2018 - academic.oup.com
A gene regulatory network (GRN) is a collection of regulatory interactions between
transcription factors (TFs) and their target genes. GRNs control different biological processes …

Integrative inference of transcriptional networks in Arabidopsis yields novel ROS signalling regulators

I De Clercq, J Van de Velde, X Luo, L Liu, V Storme… - Nature Plants, 2021 - nature.com
Gene regulation is a dynamic process in which transcription factors (TFs) play an important
role in controlling spatiotemporal gene expression. To enhance our global understanding of …

Whole-genome strategies for marker-assisted plant breeding

Y Xu, Y Lu, C Xie, S Gao, J Wan, BM Prasanna - Molecular breeding, 2012 - Springer
Molecular breeding for complex traits in crop plants requires understanding and
manipulation of many factors influencing plant growth, development and responses to an …

[HTML][HTML] Dehydration stress memory genes of Zea mays; comparison with Arabidopsis thaliana

Y Ding, L Virlouvet, N Liu, JJ Riethoven, M Fromm… - BMC Plant …, 2014 - Springer
Background Pre-exposing plants to diverse abiotic stresses may alter their physiological and
transcriptional responses to a subsequent stress, suggesting a form of “stress memory” …