New era of artificial intelligence and machine learning-based detection, diagnosis, and therapeutics in Parkinson's disease
Parkinson's disease (PD) is characterized by the loss of neuronal cells, which leads to
synaptic dysfunction and cognitive defects. Despite the advancements in treatment …
synaptic dysfunction and cognitive defects. Despite the advancements in treatment …
[HTML][HTML] Enhancing phage therapy through synthetic biology and genome engineering
BR Lenneman, J Fernbach, MJ Loessner, TK Lu… - Current Opinion in …, 2021 - Elsevier
Highlights•Synthetic biology enables efficient phage genome engineering.•Phages with
tunable host range and antimicrobial payload delivery enhance efficacy.•Phage design …
tunable host range and antimicrobial payload delivery enhance efficacy.•Phage design …
[HTML][HTML] Identification of mobile genetic elements with geNomad
Identifying and characterizing mobile genetic elements in sequencing data is essential for
understanding their diversity, ecology, biotechnological applications and impact on public …
understanding their diversity, ecology, biotechnological applications and impact on public …
[HTML][HTML] Thousands of previously unknown phages discovered in whole-community human gut metagenomes
Background Double-stranded DNA bacteriophages (dsDNA phages) play pivotal roles in
structuring human gut microbiomes; yet, the gut virome is far from being fully characterized …
structuring human gut microbiomes; yet, the gut virome is far from being fully characterized …
[HTML][HTML] Extensive gut virome variation and its associations with host and environmental factors in a population-level cohort
S Nishijima, N Nagata, Y Kiguchi, Y Kojima… - Nature …, 2022 - nature.com
Indigenous bacteriophage communities (virome) in the human gut have a huge impact on
the structure and function of gut bacterial communities (bacteriome), but virome variation at a …
the structure and function of gut bacterial communities (bacteriome), but virome variation at a …
[HTML][HTML] Phage family classification under Caudoviricetes: A review of current tools using the latest ICTV classification framework
Bacteriophages, which are viruses infecting bacteria, are the most ubiquitous and diverse
entities in the biosphere. There is accumulating evidence revealing their important roles in …
entities in the biosphere. There is accumulating evidence revealing their important roles in …
[HTML][HTML] Genome binning of viral entities from bulk metagenomics data
Despite the accelerating number of uncultivated virus sequences discovered in
metagenomics and their apparent importance for health and disease, the human gut virome …
metagenomics and their apparent importance for health and disease, the human gut virome …
[HTML][HTML] Incorporating machine learning into established bioinformatics frameworks
N Auslander, AB Gussow, EV Koonin - International journal of molecular …, 2021 - mdpi.com
The exponential growth of biomedical data in recent years has urged the application of
numerous machine learning techniques to address emerging problems in biology and …
numerous machine learning techniques to address emerging problems in biology and …
Widespread stop-codon recoding in bacteriophages may regulate translation of lytic genes
Bacteriophages (phages) are obligate parasites that use host bacterial translation
machinery to produce viral proteins. However, some phages have alternative genetic codes …
machinery to produce viral proteins. However, some phages have alternative genetic codes …
[HTML][HTML] Predicting bacteriophage hosts based on sequences of annotated receptor-binding proteins
Nowadays, bacteriophages are increasingly considered as an alternative treatment for a
variety of bacterial infections in cases where classical antibiotics have become ineffective …
variety of bacterial infections in cases where classical antibiotics have become ineffective …