Synthetic biology to access and expand nature's chemical diversity

MJ Smanski, H Zhou, J Claesen, B Shen… - Nature Reviews …, 2016 - nature.com
Bacterial genomes encode the biosynthetic potential to produce hundreds of thousands of
complex molecules with diverse applications, from medicine to agriculture and materials …

Customizing cellular signal processing by synthetic multi-level regulatory circuits

Y Gao, L Wang, B Wang - Nature Communications, 2023 - nature.com
As synthetic biology permeates society, the signal processing circuits in engineered living
systems must be customized to meet practical demands. Towards this mission, novel …

Synthetic genetic circuits as a means of reprogramming plant roots

JAN Brophy, KJ Magallon, L Duan, V Zhong… - Science, 2022 - science.org
The shape of a plant's root system influences its ability to reach essential nutrients in the soil
and to acquire water during drought. Progress in engineering plant roots to optimize water …

Designing cell function: assembly of synthetic gene circuits for cell biology applications

M Xie, M Fussenegger - Nature Reviews Molecular Cell Biology, 2018 - nature.com
Synthetic biology is the discipline of engineering application-driven biological functionalities
that were not evolved by nature. Early breakthroughs of cell engineering, which were based …

Engineering prokaryotic transcriptional activators as metabolite biosensors in yeast

ML Skjoedt, T Snoek, KR Kildegaard… - Nature chemical …, 2016 - nature.com
Whole-cell biocatalysts have proven a tractable path toward sustainable production of bulk
and fine chemicals. Yet the screening of libraries of cellular designs to identify best …

Transcription factor-based biosensors in biotechnology: current state and future prospects

R Mahr, J Frunzke - Applied microbiology and biotechnology, 2016 - Springer
Living organisms have evolved a plethora of sensing systems for the intra-and extracellular
detection of small molecules, ions or physical parameters. Several recent studies have …

Synthetic microbe-to-plant communication channels

A Boo, T Toth, Q Yu, A Pfotenhauer, BD Fields… - Nature …, 2024 - nature.com
Plants and microbes communicate to collaborate to stop pests, scavenge nutrients, and
react to environmental change. Microbiota consisting of thousands of species interact with …

An endoribonuclease-based feedforward controller for decoupling resource-limited genetic modules in mammalian cells

RD Jones, Y Qian, V Siciliano, B DiAndreth… - Nature …, 2020 - nature.com
Synthetic biology has the potential to bring forth advanced genetic devices for applications
in healthcare and biotechnology. However, accurately predicting the behavior of engineered …

[HTML][HTML] Context-aware synthetic biology by controller design: Engineering the mammalian cell

N Shakiba, RD Jones, R Weiss, D Del Vecchio - Cell systems, 2021 - cell.com
The rise of systems biology has ushered a new paradigm: the view of the cell as a system
that processes environmental inputs to drive phenotypic outputs. Synthetic biology provides …

PERSIST platform provides programmable RNA regulation using CRISPR endoRNases

B DiAndreth, N Wauford, E Hu, S Palacios… - Nature …, 2022 - nature.com
Regulated transgene expression is an integral component of gene therapies, cell therapies
and biomanufacturing. However, transcription factor-based regulation, upon which most …