[HTML][HTML] Manipulating gene expression levels in mammalian cell factories: An outline of synthetic molecular toolboxes to achieve multiplexed control

P Eisenhut, N Marx, G Borsi, M Papež, C Ruggeri… - New …, 2024 - Elsevier
Mammalian cells have developed dedicated molecular mechanisms to tightly control
expression levels of their genes where the specific transcriptomic signature across all genes …

Optimizing calcium detection methods in animal systems: a sandbox for synthetic biology

ES Li, MS Saha - Biomolecules, 2021 - mdpi.com
Since the 1970s, the emergence and expansion of novel methods for calcium ion (Ca2+)
detection have found diverse applications in vitro and in vivo across a series of model …

Dual roles of the serine/arginine‐rich splicing factor SR45a in promoting and interacting with nuclear cap‐binding complex to modulate the salt‐stress response in …

Y Li, Q Guo, P Liu, J Huang, S Zhang, G Yang… - New …, 2021 - Wiley Online Library
Alternative splicing (AS) is emerging as a critical co‐transcriptional regulation for plants in
response to environmental stresses. Although multiple splicing factors have been linked to …

Intronic microRNA‐directed regulation of mitochondrial reactive oxygen species enhances plant stress tolerance in Arabidopsis

WB Xu, L Zhao, P Liu, QH Guo, CA Wu… - New …, 2023 - Wiley Online Library
MicroRNAs (miRNAs) play crucial roles in regulating plant development and stress
responses. However, the functions and mechanism of intronic miRNAs in plants are poorly …

Multiomic big data analysis challenges: increasing confidence in the interpretation of artificial intelligence assessments

MT Odenkirk, DM Reif, ES Baker - Analytical chemistry, 2021 - ACS Publications
The need for holistic molecular measurements to better understand disease initiation,
development, diagnosis, and therapy has led to an increasing number of multiomic …

Splicing and editing of ionotropic glutamate receptors: a comprehensive analysis based on human RNA-Seq data

R Herbrechter, N Hube, R Buchholz… - Cellular and Molecular Life …, 2021 - Springer
Ionotropic glutamate receptors (iGluRs) play key roles for signaling in the central nervous
system. Alternative splicing and RNA editing are well-known mechanisms to increase iGluR …

Prediction of transcript isoforms in 19 chicken tissues by Oxford Nanopore long-read sequencing

D Guan, MM Halstead, AD Islas-Trejo… - Frontiers in …, 2022 - frontiersin.org
To identify and annotate transcript isoforms in the chicken genome, we generated Nanopore
long-read sequencing data from 68 samples that encompassed 19 diverse tissues collected …

Cell-specific regulation of gene expression using splicing-dependent frameshifting

JP Ling, AM Bygrave, CP Santiago… - Nature …, 2022 - nature.com
Precise and reliable cell-specific gene delivery remains technically challenging. Here we
report a splicing-based approach for controlling gene expression whereby separate …

Multiple alternative promoters and alternative splicing enable universal transcription-based logic computation in mammalian cells

J Doshi, K Willis, A Madurga, C Stelzer, Y Benenson - Cell Reports, 2020 - cell.com
Multi-input logic gene circuits can enable sophisticated control of cell function, yet large-
scale synthetic circuitry in mammalian cells has relied on post-transcriptional regulation or …

Alternative Splicing Variation: Accessing and Exploiting in Crop Improvement Programs

SL Dwivedi, LF Quiroz, ASN Reddy, C Spillane… - International Journal of …, 2023 - mdpi.com
Alternative splicing (AS) is a gene regulatory mechanism modulating gene expression in
multiple ways. AS is prevalent in all eukaryotes including plants. AS generates two or more …