[HTML][HTML] Manipulating gene expression levels in mammalian cell factories: An outline of synthetic molecular toolboxes to achieve multiplexed control
P Eisenhut, N Marx, G Borsi, M Papež, C Ruggeri… - New …, 2024 - Elsevier
Mammalian cells have developed dedicated molecular mechanisms to tightly control
expression levels of their genes where the specific transcriptomic signature across all genes …
expression levels of their genes where the specific transcriptomic signature across all genes …
Optimizing calcium detection methods in animal systems: a sandbox for synthetic biology
ES Li, MS Saha - Biomolecules, 2021 - mdpi.com
Since the 1970s, the emergence and expansion of novel methods for calcium ion (Ca2+)
detection have found diverse applications in vitro and in vivo across a series of model …
detection have found diverse applications in vitro and in vivo across a series of model …
Dual roles of the serine/arginine‐rich splicing factor SR45a in promoting and interacting with nuclear cap‐binding complex to modulate the salt‐stress response in …
Y Li, Q Guo, P Liu, J Huang, S Zhang, G Yang… - New …, 2021 - Wiley Online Library
Alternative splicing (AS) is emerging as a critical co‐transcriptional regulation for plants in
response to environmental stresses. Although multiple splicing factors have been linked to …
response to environmental stresses. Although multiple splicing factors have been linked to …
Intronic microRNA‐directed regulation of mitochondrial reactive oxygen species enhances plant stress tolerance in Arabidopsis
WB Xu, L Zhao, P Liu, QH Guo, CA Wu… - New …, 2023 - Wiley Online Library
MicroRNAs (miRNAs) play crucial roles in regulating plant development and stress
responses. However, the functions and mechanism of intronic miRNAs in plants are poorly …
responses. However, the functions and mechanism of intronic miRNAs in plants are poorly …
Multiomic big data analysis challenges: increasing confidence in the interpretation of artificial intelligence assessments
The need for holistic molecular measurements to better understand disease initiation,
development, diagnosis, and therapy has led to an increasing number of multiomic …
development, diagnosis, and therapy has led to an increasing number of multiomic …
Splicing and editing of ionotropic glutamate receptors: a comprehensive analysis based on human RNA-Seq data
R Herbrechter, N Hube, R Buchholz… - Cellular and Molecular Life …, 2021 - Springer
Ionotropic glutamate receptors (iGluRs) play key roles for signaling in the central nervous
system. Alternative splicing and RNA editing are well-known mechanisms to increase iGluR …
system. Alternative splicing and RNA editing are well-known mechanisms to increase iGluR …
Prediction of transcript isoforms in 19 chicken tissues by Oxford Nanopore long-read sequencing
D Guan, MM Halstead, AD Islas-Trejo… - Frontiers in …, 2022 - frontiersin.org
To identify and annotate transcript isoforms in the chicken genome, we generated Nanopore
long-read sequencing data from 68 samples that encompassed 19 diverse tissues collected …
long-read sequencing data from 68 samples that encompassed 19 diverse tissues collected …
Cell-specific regulation of gene expression using splicing-dependent frameshifting
Precise and reliable cell-specific gene delivery remains technically challenging. Here we
report a splicing-based approach for controlling gene expression whereby separate …
report a splicing-based approach for controlling gene expression whereby separate …
Multiple alternative promoters and alternative splicing enable universal transcription-based logic computation in mammalian cells
Multi-input logic gene circuits can enable sophisticated control of cell function, yet large-
scale synthetic circuitry in mammalian cells has relied on post-transcriptional regulation or …
scale synthetic circuitry in mammalian cells has relied on post-transcriptional regulation or …
Alternative Splicing Variation: Accessing and Exploiting in Crop Improvement Programs
Alternative splicing (AS) is a gene regulatory mechanism modulating gene expression in
multiple ways. AS is prevalent in all eukaryotes including plants. AS generates two or more …
multiple ways. AS is prevalent in all eukaryotes including plants. AS generates two or more …