Improving target assessment in biomedical research: the GOT-IT recommendations
CH Emmerich, LM Gamboa, MCJ Hofmann… - Nature reviews Drug …, 2021 - nature.com
Academic research plays a key role in identifying new drug targets, including understanding
target biology and links between targets and disease states. To lead to new drugs, however …
target biology and links between targets and disease states. To lead to new drugs, however …
Cyclic di-AMP signaling in bacteria
J Stülke, L Krüger - Annual review of microbiology, 2020 - annualreviews.org
The second messenger molecule cyclic di-AMP (c-di-AMP) is formed by many bacteria and
archaea. In many species that produce c-di-AMP, this second messenger is essential for …
archaea. In many species that produce c-di-AMP, this second messenger is essential for …
A bacterial pan-genome makes gene essentiality strain-dependent and evolvable
Many bacterial species are represented by a pan-genome, whose genetic repertoire far
outstrips that of any single bacterial genome. Here we investigate how a bacterial pan …
outstrips that of any single bacterial genome. Here we investigate how a bacterial pan …
CRISPR screens in physiologic medium reveal conditionally essential genes in human cells
NJ Rossiter, KS Huggler, CH Adelmann, HR Keys… - Cell metabolism, 2021 - cell.com
Forward genetic screens across hundreds of cancer cell lines have started to define the
genetic dependencies of proliferating human cells and how these vary by genotype and …
genetic dependencies of proliferating human cells and how these vary by genotype and …
Translation variation across genetic backgrounds reveals a post-transcriptional buffering signature in yeast
EM Teyssonniere, Y Shichino, M Mito… - Nucleic Acids …, 2024 - academic.oup.com
Gene expression is known to vary among individuals, and this variability can impact the
phenotypic diversity observed in natural populations. While the transcriptome and proteome …
phenotypic diversity observed in natural populations. While the transcriptome and proteome …
The identification of essential cellular genes is critical for validating drug targets
T Xu, S Wang, T Ma, Y Dong, CR Ashby Jr, GF Hao - Drug Discovery Today, 2024 - Elsevier
Highlights•The identification of novel drug targets is a key step in drug innovation.•Essential
genes are vital for organism survival and are promising drug targets.•We describe in detail …
genes are vital for organism survival and are promising drug targets.•We describe in detail …
Synergisms of machine learning and constraint‐based modeling of metabolism for analysis and optimization of fermentation parameters
Recent noteworthy advances in developing high‐performing microbial and mammalian
strains have enabled the sustainable production of bio‐economically valuable substances …
strains have enabled the sustainable production of bio‐economically valuable substances …
Nme8 is essential for protection against chemotherapy drug cisplatin-induced male reproductive toxicity in mice
H Zhu, H Wang, D Wang, S Liu, X Sun, Z Qu… - Cell Death & …, 2024 - nature.com
Cisplatin (CP), a chemotherapy drug commonly used in cancers treatment, causes serious
reproductive toxicity. With younger cancer patients and increasing survival rates, it is …
reproductive toxicity. With younger cancer patients and increasing survival rates, it is …
Integration of graph neural networks and genome-scale metabolic models for predicting gene essentiality
Genome-scale metabolic models are powerful tools for understanding cellular physiology.
Flux balance analysis (FBA), in particular, is an optimization-based approach widely …
Flux balance analysis (FBA), in particular, is an optimization-based approach widely …
Construction and application of the conditionally essential gene knockdown library in Klebsiella pneumoniae to screen potential antimicrobial targets and virulence …
Q Zhu, Q Lin, Y Jiang, S Chen, J Tian… - Applied and …, 2023 - Am Soc Microbiol
Klebsiella pneumoniae is a ubiquitous human pathogen, and its clinical treatment faces two
major challenges: multidrug resistance and the pathogenesis of hypervirulent K …
major challenges: multidrug resistance and the pathogenesis of hypervirulent K …