High-throughput reclassification of SCN5A variants

AM Glazer, Y Wada, B Li, A Muhammad… - The American Journal of …, 2020 - cell.com
Partial or complete loss-of-function variants in SCN5A are the most common genetic cause
of the arrhythmia disorder Brugada syndrome (BrS1). However, the pathogenicity of SCN5A …

Structures illuminate cardiac ion channel functions in health and in long QT syndrome

KR Brewer, G Kuenze, CG Vanoye… - Frontiers in …, 2020 - frontiersin.org
The cardiac action potential is critical to the production of a synchronized heartbeat. This
electrical impulse is governed by the intricate activity of cardiac ion channels, among them …

Deep Mutational Scan of an SCN5A Voltage Sensor

AM Glazer, BM Kroncke, KA Matreyek… - Circulation: Genomic …, 2020 - Am Heart Assoc
Background: Variants in ion channel genes have classically been studied in low throughput
by patch clamping. Deep mutational scanning is a complementary approach that can …

[HTML][HTML] Computational identification of vesicular transport proteins from sequences using deep gated recurrent units architecture

NQK Le, EKY Yapp, N Nagasundaram… - Computational and …, 2019 - Elsevier
Protein function prediction is one of the most well-studied topics, attracting attention from
countless researchers in the field of computational biology. Implementing deep neural …

Continuous Bayesian variant interpretation accounts for incomplete penetrance among Mendelian cardiac channelopathies

MJ O'Neill, L Sala, I Denjoy, Y Wada, K Kozek… - Genetics in …, 2023 - Elsevier
Abstract Purpose The congenital Long QT Syndrome (LQTS) and Brugada Syndrome (BrS)
are Mendelian autosomal dominant diseases that frequently precipitate fatal cardiac …

[HTML][HTML] Next-generation sequencing of postmortem molecular markers to support for medicolegal autopsy

JA Ariza, AHM Rocha, RC Pérez… - Forensic Science …, 2022 - Elsevier
In most cases, sudden unexplained death (SUD) is caused by hereditary cardiac
arrhythmias that standard forensic autopsy procedures cannot prove. For this reason …

Estimating the Posttest Probability of Long QT Syndrome Diagnosis for Rare KCNH2 Variants

K Kozek, Y Wada, L Sala, I Denjoy, C Egly… - Circulation: Genomic …, 2021 - Am Heart Assoc
Background: The proliferation of genetic profiling has revealed many associations between
genetic variations and disease. However, large-scale phenotyping efforts in largely healthy …

Predicting the functional impact of KCNQ1 variants with artificial neural networks

S Phul, G Kuenze, CG Vanoye… - PLoS computational …, 2022 - journals.plos.org
Recent advances in experimental and computational protein structure determination have
provided access to high-quality structures for most human proteins and mutants thereof …

A Bayesian method to estimate variant-induced disease penetrance

BM Kroncke, DK Smith, Y Zuo, AM Glazer… - PLoS …, 2020 - journals.plos.org
A major challenge emerging in genomic medicine is how to assess best disease risk from
rare or novel variants found in disease-related genes. The expanding volume of data …

Genotype–Phenotype Correlation in a Family with Brugada Syndrome Harboring the Novel p.Gln371* Nonsense Variant in the SCN5A Gene

MM Monasky, E Micaglio, D Giachino… - International Journal of …, 2019 - mdpi.com
Brugada syndrome (BrS) is marked by coved ST-segment elevation and increased risk of
sudden cardiac death. The genetics of this syndrome are elusive in over half of the cases …