Molecular and evolutionary processes generating variation in gene expression

MS Hill, P Vande Zande, PJ Wittkopp - Nature Reviews Genetics, 2021 - nature.com
Heritable variation in gene expression is common within and between species. This
variation arises from mutations that alter the form or function of molecular gene regulatory …

The evolution of gene expression in cis and trans

SA Signor, SV Nuzhdin - Trends in Genetics, 2018 - cell.com
There is abundant variation in gene expression between individuals, populations, and
species. The evolution of gene regulation and expression within and between species is …

ZmCCT9 enhances maize adaptation to higher latitudes

C Huang, H Sun, D Xu, Q Chen… - Proceedings of the …, 2018 - National Acad Sciences
From its tropical origin in southwestern Mexico, maize spread over a wide latitudinal cline in
the Americas. This feat defies the rule that crops are inhibited from spreading easily across …

Why the need for qPCR publication guidelines?—The case for MIQE

SA Bustin - Methods, 2010 - Elsevier
The polymerase chain reaction (PCR) has matured from a labour-and time-intensive, low
throughput qualitative gel-based technique to an easily automated, rapid, high throughput …

Patterns of genome-wide allele-specific expression in hybrid rice and the implications on the genetic basis of heterosis

L Shao, F Xing, C Xu, Q Zhang, J Che… - Proceedings of the …, 2019 - National Acad Sciences
Utilization of heterosis has greatly increased the productivity of many crops worldwide.
Although tremendous progress has been made in characterizing the genetic basis of …

A yeast hybrid provides insight into the evolution of gene expression regulation

I Tirosh, S Reikhav, AA Levy, N Barkai - Science, 2009 - science.org
During evolution, novel phenotypes emerge through changes in gene expression, but the
genetic basis is poorly understood. We compared the allele-specific expression of two yeast …

Transposon insertions regulate genome‐wide allele‐specific expression and underpin flower colour variations in apple (Malus spp.)

Y Tian, A Thrimawithana, T Ding, J Guo… - Plant Biotechnology …, 2022 - Wiley Online Library
Allele‐specific expression (ASE) can lead to phenotypic diversity and evolution. However,
the mechanisms regulating ASE are not well understood, particularly in woody perennial …

Reciprocal silencing, transcriptional bias and functional divergence of homeologs in polyploid cotton (Gossypium)

B Chaudhary, L Flagel, RM Stupar, JA Udall… - Genetics, 2009 - academic.oup.com
Polyploidy is an important force in the evolution of flowering plants. Genomic merger and
doubling induce an extensive array of genomic effects, including immediate and long-term …

Complementation contributes to transcriptome complexity in maize (Zea mays L.) hybrids relative to their inbred parents

A Paschold, Y Jia, C Marcon, S Lund… - Genome …, 2012 - genome.cshlp.org
Typically, F1-hybrids are more vigorous than their homozygous, genetically distinct parents,
a phenomenon known as heterosis. In the present study, the transcriptomes of the reciprocal …

[HTML][HTML] The Role of cis Regulatory Evolution in Maize Domestication

ZH Lemmon, R Bukowski, Q Sun, JF Doebley - PLoS genetics, 2014 - journals.plos.org
Gene expression differences between divergent lineages caused by modification of cis
regulatory elements are thought to be important in evolution. We assayed genome-wide cis …