PINK1-mediated mitophagy promotes oxidative phosphorylation and redox homeostasis to induce drug-tolerant persister cancer cells

Y Li, H Chen, X Xie, B Yang, X Wang, J Zhang, T Qiao… - Cancer Research, 2023 - AACR
The drug-tolerant persister (DTP) state enables cancer cells to evade cytotoxic stress from
anticancer therapy. However, the mechanisms governing DTP generation remain poorly …

MS-DAP platform for downstream data analysis of label-free proteomics uncovers optimal workflows in benchmark data sets and increased sensitivity in analysis of …

F Koopmans, KW Li, RV Klaassen… - Journal of Proteome …, 2022 - ACS Publications
In the rapidly moving proteomics field, a diverse patchwork of data analysis pipelines and
algorithms for data normalization and differential expression analysis is used by the …

Deciphering the structure, function, and mechanism of lysine acetyltransferase cGNAT2 in cyanobacteria

K Jia, M Yang, X Liu, Q Zhang, G Cao, F Ge… - Plant …, 2024 - academic.oup.com
Lysine acetylation is a conserved regulatory posttranslational protein modification that is
performed by lysine acetyltransferases (KATs). By catalyzing the transfer of acetyl groups to …

DEP2: an upgraded comprehensive analysis toolkit for quantitative proteomics data

Z Feng, P Fang, H Zheng, X Zhang - Bioinformatics, 2023 - academic.oup.com
Mass spectrometry (MS)-based proteomics has become the most powerful approach to
study the proteome of given biological and clinical samples. Advancements in sample …

Tidyproteomics: an open-source R package and data object for quantitative proteomics post analysis and visualization

J Jones, EJ MacKrell, TY Wang, B Lomenick… - BMC …, 2023 - Springer
Background The analysis of mass spectrometry-based quantitative proteomics data can be
challenging given the variety of established analysis platforms, the differences in reporting …

Multi-Omic analysis of two common P53 mutations: proteins regulated by mutated P53 as potential targets for immunotherapy

J Vadakekolathu, DJ Boocock, K Pandey, B Guinn… - Cancers, 2022 - mdpi.com
Simple Summary TP53 is the most frequently mutated gene in many cancers, but it has
failed to be a very effective target for treatment to date. To overcome this, we have examined …

Mass‐Guided Single‐Cell MALDI Imaging of Low‐Mass Metabolites Reveals Cellular Activation Markers

JL Cairns, J Huber, A Lewen, J Jung… - Advanced …, 2024 - Wiley Online Library
Single‐cell MALDI mass spectrometry imaging (MSI) of lipids and metabolites> 200 Da has
recently come to the forefront of biomedical research and chemical biology. However, cell …

[HTML][HTML] Dynamic Multiple Reaction Monitoring of amphipod Gammarus fossarum caeca expands molecular information for understanding the impact of contaminants

M Leprêtre, A Chaumot, R Aboud, N Delorme… - Science of the Total …, 2023 - Elsevier
Mass spectrometry in multiple reaction monitoring (MRM) mode is a powerful technique that
can provide highly selective, multiplexed, and reproducible quantification of peptides …

Paternal undernutrition and overnutrition modify semen composition and preimplantation embryo developmental kinetics in mice

HL Morgan, N Eid, N Holmes, S Henson, V Wright… - BMC biology, 2024 - Springer
Background The importance of parental diet in relation to eventual offspring health is
increasing in prominence due to the increased frequency of parents of reproductive age …

Investigation on acquired palbociclib resistance by LC-MS based multi-omics analysis

Z Xue, J Zeng, X Yin, Y Li, B Meng, Y Zhao… - Frontiers in Molecular …, 2023 - frontiersin.org
Palbociclib is a specific CDK4/6 inhibitor that has been widely applied in multiple types of
tumors. Different from cytotoxic drugs, the anticancer mechanism of palbociclib mainly …