[PDF][PDF] TCS: a computer program to estimate gene genealogies

M Clement, D Posada, KA Crandall - Molecular ecology, 2000 - researchgate.net
Phylogenies are extremely useful tools, not only for establishing genealogical relationships
among a group of organisms or their parts (eg genes), but also for a variety of research once …

[引用][C] Phylogeography: The History and Formation of Species

JC Avise - 2000 - books.google.com
Phylogeography is a discipline concerned with various relationships between gene
genealogies—phylogenetics—and geography. The word “phylogeography” was coined in …

TCS: estimating gene genealogies

M Clement, Q Snell, P Walke, D Posada… - Parallel and distributed …, 2002 - computer.org
This paper considers the problem of testing a container class or other modestly-complex API-
based software system. Past experimental evaluations have shown that for many such …

Crayfish molecular systematics: using a combination of procedures to estimate phylogeny

KA Crandall, JF Fitzpatrick Jr - Systematic Biology, 1996 - academic.oup.com
The use of comparative methods to test evolutionary hypotheses has become more common
at both the macro-and microevolutionary levels. The application of such techniques is …

Perspective: the theories of Fisher and Wright in the context of metapopulations: when nature does many small experiments

MJ Wade, CJ Goodnight - Evolution, 1998 - Wiley Online Library
We critically review the two major theories of adaptive evolution developed early in this
century, Wright's shifting balance theory and Fisher's large population size theory, in light of …

[PDF][PDF] TCS: estimating gene genealogies

M Clement, Q Snell, P Walker, D Posada… - Proceedings of the 16th …, 2004 - hicomb.org
Phylogentic analysis is becoming an increasingly important tool for customized drug
treatments, epidemiological studies, and evolutionary analysis. The TCS method provides …

Local and landscape‐scale predictors of salamander abundance in New Hampshire headwater streams

WH Lowe, DT Bolger - Conservation Biology, 2002 - Wiley Online Library
We investigated the response of Gyrinophilus porphyriticus (Plethodontidae), the spring
salamander, to timber harvest in headwater streams in New Hampshire (USA). We …

Gene lineages and eastern North American palaeodrainage basins: phylogeography and speciation in salamanders of the Eurycea bislineata species complex

KH Kozak, RA Blaine, A Larson - Molecular Ecology, 2006 - Wiley Online Library
sAbstract Contemporary North American drainage basins are composites of formerly
isolated drainages, suggesting that fragmentation and fusion of palaeodrainage systems …

Phylogeography and Pleistocene evolution in the North American black bear.

S Wooding, R Ward - Molecular biology and evolution, 1997 - academic.oup.com
To determine the extent of phylogeographic structuring in North American black bear (Ursus
americanus) populations, we examined mitochondrial DNA sequences (n= 118) and …

Linear habitats and the nested clade analysis: an empirical evaluation of geographic versus river distances using an Ozark crayfish (Decapoda: Cambaridae)

JW Fetzner Jr, KA Crandall - Evolution, 2003 - Wiley Online Library
The nested clade analysis can be extremely useful in testing for an association between
genetic variation and geography and in explaining these observed patterns in terms of …