Small RNAs in bacteria and archaea: who they are, what they do, and how they do it

EGH Wagner, P Romby - Advances in genetics, 2015 - Elsevier
Small RNAs are ubiquitously present regulators in all kingdoms of life. Most bacterial and
archaeal small RNAs (sRNAs) act by antisense mechanisms on multiple target mRNAs …

Small RNAs in the control of RpoS, CsgD, and biofilm architecture of Escherichia coli

F Mika, R Hengge - RNA biology, 2014 - Taylor & Francis
Amyloid curli fibers and cellulose are extracellular matrix components produced in the
stationary phase top layer of E. coli macrocolonies, which confer physical protection, strong …

Grad-seq guides the discovery of ProQ as a major small RNA-binding protein

A Smirnov, KU Förstner, E Holmqvist… - Proceedings of the …, 2016 - National Acad Sciences
The functional annotation of transcriptomes and identification of noncoding RNA (ncRNA)
classes has been greatly facilitated by the advent of next-generation RNA sequencing …

Molecular mechanism of mRNA repression in trans by a ProQ‐dependent small RNA

A Smirnov, C Wang, LL Drewry, J Vogel - The EMBO journal, 2017 - embopress.org
Research into post‐transcriptional control of mRNAs by small noncoding RNAs (sRNAs) in
the model bacteria Escherichia coli and Salmonella enterica has mainly focused on sRNAs …

[HTML][HTML] The Impact of 18 Ancestral and Horizontally-Acquired Regulatory Proteins upon the Transcriptome and sRNA Landscape of Salmonella enterica serovar …

AM Colgan, C Kröger, M Diard, WD Hardt… - PLoS …, 2016 - journals.plos.org
We know a great deal about the genes used by the model pathogen Salmonella enterica
serovar Typhimurium to cause disease, but less about global gene regulation. New tools for …

The major RNA-binding protein ProQ impacts virulence gene expression in Salmonella enterica serovar Typhimurium

AJ Westermann, E Venturini, ME Sellin, KU Förstner… - MBio, 2019 - Am Soc Microbiol
FinO domain proteins such as ProQ of the model pathogen Salmonella enterica have
emerged as a new class of major RNA-binding proteins in bacteria. ProQ has been shown to …

The role of RNases in the regulation of small RNAs

M Saramago, C Bárria, RF Dos Santos, IJ Silva… - Current opinion in …, 2014 - Elsevier
Highlights•Bacterial RNases control sRNA-mediated negative and positive
regulation.•RNase III can simultaneously cleave the sRNAs and their respective mRNA …

Small regulatory RNAs in the enterobacterial response to envelope damage and oxidative stress

KS Fröhlich, S Gottesman - … with RNA in Bacteria and Archaea, 2018 - Wiley Online Library
One major paradigm for RNA‐based regulation in both eukaryotes and prokaryotes is small
regulatory RNAs (sRNAs) that pair with mRNAs, leading to changes in translation and …

SraL sRNA interaction regulates the terminator by preventing premature transcription termination of rho mRNA

IJ Silva, S Barahona, A Eyraud… - Proceedings of the …, 2019 - National Acad Sciences
Transcription termination is a critical step in the control of gene expression. One of the major
termination mechanisms is mediated by Rho factor that dissociates the complex mRNA-DNA …

The target spectrum of SdsR small RNA in Salmonella

KS Fröhlich, K Haneke, K Papenfort… - Nucleic Acids …, 2016 - academic.oup.com
Abstract Model enteric bacteria such as Escherichia coli and Salmonella enterica express
hundreds of small non-coding RNAs (sRNAs), targets for most of which are yet unknown …