Population-level integration of single-cell datasets enables multi-scale analysis across samples

C De Donno, S Hediyeh-Zadeh, AA Moinfar… - Nature …, 2023 - nature.com
The increasing generation of population-level single-cell atlases has the potential to link
sample metadata with cellular data. Constructing such references requires integration of …

Considerations for building and using integrated single-cell atlases

K Hrovatin, L Sikkema, VA Shitov, G Heimberg… - Nature …, 2024 - nature.com
The rapid adoption of single-cell technologies has created an opportunity to build single-cell
'atlases' integrating diverse datasets across many laboratories. Such atlases can serve as a …

Consensus prediction of cell type labels in single-cell data with popV

C Ergen, G Xing, C Xu, M Kim, M Jayasuriya… - Nature Genetics, 2024 - nature.com
Cell-type classification is a crucial step in single-cell sequencing analysis. Various methods
have been proposed for transferring a cell-type label from an annotated reference atlas to …

Consensus prediction of cell type labels with popV

C Ergen, G Xing, C Xu, M Jayasuriya, E McGeever… - bioRxiv, 2023 - biorxiv.org
Cell-type classification is a crucial step in single-cell analysis. To facilitate this, several
methods have been proposed for the task of transferring a cell-type label from an annotated …